// ===========================SCORING METHODS===================//
public double scoreDag(Graph graph) {
Graph dag = new EdgeListGraphSingleConnections(graph);
buildIndexing(graph);
double score = 0.0;
for (Node y : dag.getNodes()) {
Set<Node> parents = new HashSet<Node>(dag.getParents(y));
int nextIndex = -1;
for (int i = 0; i < getVariables().size(); i++) {
nextIndex = hashIndices.get(variables.get(i));
}
int parentIndices[] = new int[parents.size()];
Iterator<Node> pi = parents.iterator();
int count = 0;
while (pi.hasNext()) {
Node nextParent = pi.next();
parentIndices[count++] = hashIndices.get(nextParent);
}
if (this.isDiscrete()) {
score += localDiscreteScore(nextIndex, parentIndices);
} else {
score += localSemScore(nextIndex, parentIndices);
}
}
return score;
}
private boolean quartetVanishes(Set<Integer> quartet) {
if (quartet.size() != 4)
throw new IllegalArgumentException("Expecting a quartet, size = " + quartet.size());
Iterator<Integer> iter = quartet.iterator();
int x = iter.next();
int y = iter.next();
int z = iter.next();
int w = iter.next();
return testVanishing(x, y, z, w);
}
/** Iterator over the KnowledgeEdge's representing required edges. */
public final Iterator<KnowledgeEdge> requiredEdgesIterator() {
Set<KnowledgeEdge> edges = new HashSet<>();
for (OrderedPair<Set<MyNode>> o : requiredRulesSpecs) {
final Set<MyNode> first = o.getFirst();
for (MyNode s1 : first) {
final Set<MyNode> second = o.getSecond();
for (MyNode s2 : second) {
if (!s1.equals(s2)) {
edges.add(new KnowledgeEdge(s1.getName(), s2.getName()));
}
}
}
}
return edges.iterator();
}
/** Iterator over the knowledge's explicitly forbidden edges. */
public final Iterator<KnowledgeEdge> explicitlyForbiddenEdgesIterator() {
Set<OrderedPair<Set<MyNode>>> copy = new HashSet<>(forbiddenRulesSpecs);
copy.removeAll(forbiddenTierRules());
for (KnowledgeGroup group : knowledgeGroups) {
copy.remove(knowledgeGroupRules.get(group));
}
Set<KnowledgeEdge> edges = new HashSet<>();
for (OrderedPair<Set<MyNode>> o : copy) {
final Set<MyNode> first = o.getFirst();
for (MyNode s1 : first) {
final Set<MyNode> second = o.getSecond();
for (MyNode s2 : second) {
edges.add(new KnowledgeEdge(s1.getName(), s2.getName()));
}
}
}
return edges.iterator();
}
