private Graph condense(Graph mimStructure, Graph mimbuildStructure) {
// System.out.println("Uncondensed: " + mimbuildStructure);
Map<Node, Node> substitutions = new HashMap<Node, Node>();
for (Node node : mimbuildStructure.getNodes()) {
for (Node _node : mimStructure.getNodes()) {
if (node.getName().startsWith(_node.getName())) {
substitutions.put(node, _node);
break;
}
substitutions.put(node, node);
}
}
HashSet<Node> nodes = new HashSet<Node>(substitutions.values());
Graph graph = new EdgeListGraph(new ArrayList<Node>(nodes));
for (Edge edge : mimbuildStructure.getEdges()) {
Node node1 = substitutions.get(edge.getNode1());
Node node2 = substitutions.get(edge.getNode2());
if (node1 == node2) continue;
if (graph.isAdjacentTo(node1, node2)) continue;
graph.addEdge(new Edge(node1, node2, edge.getEndpoint1(), edge.getEndpoint2()));
}
// System.out.println("Condensed: " + graph);
return graph;
}
@Override
public Map<String, String> getParamSettings() {
paramSettings.put("Algorithm", getAlgorithmName());
return paramSettings;
}