Exemplo n.º 1
0
  /** Orients according to background knowledge */
  private void fciOrientbk(IKnowledge bk, Graph graph, List<Node> variables) {
    logger.log("info", "Starting BK Orientation.");

    for (Iterator<KnowledgeEdge> it = bk.forbiddenEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge edge = it.next();

      // match strings to variables in the graph.
      Node from = SearchGraphUtils.translate(edge.getFrom(), variables);
      Node to = SearchGraphUtils.translate(edge.getTo(), variables);

      if (from == null || to == null) {
        continue;
      }

      if (graph.getEdge(from, to) == null) {
        continue;
      }

      // Orient to*->from
      graph.setEndpoint(to, from, Endpoint.ARROW);
      graph.setEndpoint(from, to, Endpoint.CIRCLE);
      changeFlag = true;
      logger.log(
          "knowledgeOrientation",
          SearchLogUtils.edgeOrientedMsg("Knowledge", graph.getEdge(from, to)));
    }

    for (Iterator<KnowledgeEdge> it = bk.requiredEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge edge = it.next();

      // match strings to variables in this graph
      Node from = SearchGraphUtils.translate(edge.getFrom(), variables);
      Node to = SearchGraphUtils.translate(edge.getTo(), variables);

      if (from == null || to == null) {
        continue;
      }

      if (graph.getEdge(from, to) == null) {
        continue;
      }

      graph.setEndpoint(to, from, Endpoint.TAIL);
      graph.setEndpoint(from, to, Endpoint.ARROW);
      changeFlag = true;
      logger.log(
          "knowledgeOrientation",
          SearchLogUtils.edgeOrientedMsg("Knowledge", graph.getEdge(from, to)));
    }

    logger.log("info", "Finishing BK Orientation.");
  }
  /** Orients according to background knowledge. */
  public static void pcOrientbk(Knowledge bk, Graph graph, List<Node> nodes) {
    TetradLogger.getInstance().log("info", "Staring BK Orientation.");
    for (Iterator<KnowledgeEdge> it = bk.forbiddenEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge edge = it.next();

      // match strings to variables in the graph.
      Node from = translate(edge.getFrom(), nodes);
      Node to = translate(edge.getTo(), nodes);

      if (from == null || to == null) {
        continue;
      }

      if (graph.getEdge(from, to) == null) {
        continue;
      }

      // Orient to-->from
      graph.removeEdge(from, to);
      graph.addDirectedEdge(from, to);
      graph.setEndpoint(from, to, Endpoint.TAIL);
      graph.setEndpoint(to, from, Endpoint.ARROW);

      TetradLogger.getInstance()
          .edgeOriented(SearchLogUtils.edgeOrientedMsg("Knowledge", graph.getEdge(to, from)));
    }

    for (Iterator<KnowledgeEdge> it = bk.requiredEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge edge = it.next();

      // match strings to variables in this graph
      Node from = translate(edge.getFrom(), nodes);
      Node to = translate(edge.getTo(), nodes);

      if (from == null || to == null) {
        continue;
      }

      if (graph.getEdge(from, to) == null) {
        continue;
      }

      // Orient from-->to
      graph.setEndpoint(to, from, Endpoint.TAIL);
      graph.setEndpoint(from, to, Endpoint.ARROW);
      TetradLogger.getInstance()
          .edgeOriented(SearchLogUtils.edgeOrientedMsg("Knowledge", graph.getEdge(from, to)));
    }
    TetradLogger.getInstance().log("info", "Finishing BK Orientation.");
  }
Exemplo n.º 3
0
  private void addRequiredEdges(Graph graph) {
    if (true) return;
    if (knowledgeEmpty()) return;

    for (Iterator<KnowledgeEdge> it = getKnowledge().requiredEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge next = it.next();

      Node nodeA = graph.getNode(next.getFrom());
      Node nodeB = graph.getNode(next.getTo());

      if (!graph.isAncestorOf(nodeB, nodeA)) {
        graph.removeEdges(nodeA, nodeB);
        graph.addDirectedEdge(nodeA, nodeB);
        TetradLogger.getInstance()
            .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeA, nodeB));
      }
    }
    for (Edge edge : graph.getEdges()) {
      final String A = edge.getNode1().getName();
      final String B = edge.getNode2().getName();

      if (knowledge.isForbidden(A, B)) {
        Node nodeA = edge.getNode1();
        Node nodeB = edge.getNode2();

        if (nodeA != null
            && nodeB != null
            && graph.isAdjacentTo(nodeA, nodeB)
            && !graph.isChildOf(nodeA, nodeB)) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
        if (!graph.isChildOf(nodeA, nodeB)
            && getKnowledge().isForbidden(nodeA.getName(), nodeB.getName())) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
      } else if (knowledge.isForbidden(B, A)) {
        Node nodeA = edge.getNode2();
        Node nodeB = edge.getNode1();

        if (nodeA != null
            && nodeB != null
            && graph.isAdjacentTo(nodeA, nodeB)
            && !graph.isChildOf(nodeA, nodeB)) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
        if (!graph.isChildOf(nodeA, nodeB)
            && getKnowledge().isForbidden(nodeA.getName(), nodeB.getName())) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
      }
    }
  }
Exemplo n.º 4
0
 private String getString(KnowledgeEdge next) {
   return next.getTo();
 }