/**
* Callback to handle showing edge details for the active cytoscape edge.
*
* @see NetworkDetailsListener#onSelectEvent(cytoscape.data.SelectEvent)
* @param kn the {@link KAMNetwork kam network} containing the edge
* @param edge the {@link CyEdge cytoscape edge} that is active
*/
public void showEdgeDetails(final KAMNetwork kn, final CyEdge edge) {
final KamEdge kamEdge = kn.getKAMEdge(edge);
final List<BelStatement> statements = kamService.getSupportingEvidence(kamEdge);
// set edge details and show results panel
stmtTableModel.setStatements(statements);
// show edge details panel
int edgeTabIdx = resultsPanel.indexOfComponent(edgeDetailPanel);
resultsPanel.setSelectedIndex(edgeTabIdx);
edgeDetailPanel.setVisible(true);
}
/**
* Callback to handle showing node details for the active cytoscape node.
*
* @see NetworkDetailsListener#onSelectEvent(cytoscape.data.SelectEvent)
* @param kn the {@link KAMNetwork kam network} containing the node
* @param node the {@link CyNode cytoscape node} that is active
*/
public void showNodeDetails(final KAMNetwork kn, final CyNode node) {
final KamNode kamNode = kn.getKAMNode(node);
if (kamNode == null) {
// node is not kam backed
return;
}
final List<BelTerm> terms = kamService.getSupportingTerms(kamNode);
// set node details and show results panel
termTableModel.setTerms(terms);
// show node details panel
int nodeTabIdx = resultsPanel.indexOfComponent(nodeDetailPanel);
resultsPanel.setSelectedIndex(nodeTabIdx);
nodeDetailPanel.setVisible(true);
}
private DetailsView() {
resultsPanel = (CytoPanelImp) Cytoscape.getDesktop().getCytoPanel(SwingConstants.EAST);
this.kamService = KAMServiceFactory.getInstance().getKAMService();
// build node details panel and add to results panel
nodeDetailPanel = new JPanel();
nodeDetailPanel.setName("KAM Node Info");
JScrollPane tblScroll = new JScrollPane();
JTable termTbl = new JTable();
termTbl.setShowGrid(true);
termTbl.setShowHorizontalLines(true);
termTbl.setShowVerticalLines(true);
nodeDetailPanel.setLayout(new BorderLayout());
JLabel nodeLbl = new JLabel("Supporting BEL Terms");
nodeDetailPanel.add(nodeLbl, BorderLayout.NORTH);
termTableModel = new TermTableModel();
termTbl.setModel(termTableModel);
tblScroll.setViewportView(termTbl);
nodeDetailPanel.add(tblScroll, BorderLayout.CENTER);
resultsPanel.add(nodeDetailPanel);
// build edge details panel and add to results panel
edgeDetailPanel = new JPanel(new GridLayout(3, 1));
edgeDetailPanel.setName("KAM Edge Info");
TextAreaCellRenderer textRenderer = new TextAreaCellRenderer();
// statement panel
JPanel stmtPanel = new JPanel();
stmtPanel.setLayout(new BorderLayout());
JLabel edgeLbl = new JLabel("Supporting BEL Statements");
stmtPanel.add(edgeLbl, BorderLayout.NORTH);
JScrollPane stmtScroll = new JScrollPane();
JTable stmtTbl = new JTable();
stmtTbl.setShowGrid(true);
stmtTbl.setShowHorizontalLines(true);
stmtTbl.setShowVerticalLines(true);
stmtTableModel = new StatementTableModel();
stmtTbl.setModel(stmtTableModel);
stmtTbl.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
stmtTbl.getSelectionModel().addListSelectionListener(new StatementSelectionListener());
stmtScroll.setViewportView(stmtTbl);
stmtPanel.add(stmtScroll, BorderLayout.CENTER);
edgeDetailPanel.add(stmtPanel);
// annotation panel
JPanel annPanel = new JPanel();
annPanel.setLayout(new BorderLayout());
JLabel annLbl = new JLabel("Statement Annotations");
annPanel.add(annLbl, BorderLayout.NORTH);
JScrollPane annScroll = new JScrollPane();
JTable annTbl = new JTable();
annTbl.setShowGrid(true);
annTbl.setShowHorizontalLines(true);
annTbl.setShowVerticalLines(true);
annTableModel = new AnnotationTableModel();
annTbl.setModel(annTableModel);
annTbl.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
annTbl.getColumnModel().getColumn(1).setCellRenderer(textRenderer);
annScroll.setViewportView(annTbl);
annPanel.add(annScroll, BorderLayout.CENTER);
edgeDetailPanel.add(annPanel);
// citation panel
JPanel citPanel = new JPanel();
citPanel.setLayout(new BorderLayout());
JLabel citLbl = new JLabel("Citation");
citPanel.add(citLbl, BorderLayout.NORTH);
JScrollPane citScroll = new JScrollPane();
JTable citTbl = new JTable();
citTbl.setShowGrid(true);
citTbl.setShowHorizontalLines(true);
citTbl.setShowVerticalLines(true);
citTableModel = new CitationTableModel();
citTbl.setModel(citTableModel);
citTbl.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
citTbl.getColumnModel().getColumn(0).setCellRenderer(textRenderer);
citTbl.getColumnModel().getColumn(1).setCellRenderer(textRenderer);
citTbl.getColumnModel().getColumn(2).setCellRenderer(textRenderer);
citTbl.getColumnModel().getColumn(3).setCellRenderer(textRenderer);
citScroll.setViewportView(citTbl);
citPanel.add(citScroll, BorderLayout.CENTER);
edgeDetailPanel.add(citPanel);
// add edge details to Results Panel (cytoscape)
resultsPanel.add(edgeDetailPanel);
// delay showing panels
nodeDetailPanel.setVisible(false);
edgeDetailPanel.setVisible(false);
}
