protected void read(DataInputStream in) {
    if (in == null) {
      err("NO input stream!");
    }
    try {
      signature = FileUtils.getUInt32(in);
      if (getSignature() != DAT_HEADER_SIGNATURE) {
        err(
            "Signature must be "
                + Long.toHexString(DAT_HEADER_SIGNATURE)
                + ", but was "
                + Long.toHexString(getSignature()));
      }
      setVersion(FileUtils.getUInt32(in));

      headerSize = FileUtils.getUInt32(in);
      dataSize = FileUtils.getUInt32(in);
      if (getVersion() == 4) {
        header = new PGMAcquisitionRegionHeader();
      } else if (getVersion() == 3) {
        header = new PGMAcquisitionHeader();
      } else {
        err("Unknown header version: " + getVersion());
      }
      header.read(in);
      //   p("read header: "+toString());

    } catch (IOException ex) {
      err("Could not read header info of acquisition", ex);
    }
  }
Exemplo n.º 2
0
  public String createConversionObject(String raw_dir, String cache_dir) {
    String d = raw_dir;
    if ((FileUtils.isUrl(d) && !FileUtils.exists(d + "acq_0000.dat"))
        || (!FileUtils.isUrl(d) && !(new File(d).exists()))) {
      return "I cannot access the raw directory " + raw_dir + ", please check the path<br>";
    }
    File dir = new File(cache_dir);
    if (!dir.exists()) {
      return "I cannot access the cache directory " + dir + ", please check the path<br>";
    }
    if (!dir.canWrite()) {
      return "I don't have write permssion in the ache directory "
          + dir
          + ", please change the path<br>";
    }
    conv = new Conversion[RawType.values().length];

    String msg = "";
    for (int i = 0; i < RawType.values().length; i++) {
      RawType rtype = RawType.values()[i];
      Conversion con = new Conversion(rtype);
      conv[i] = con;
      int nrfiles = RasterIO.getNrFiles(rtype, raw_dir);

      con.max = nrfiles;
      // count nr of flows so far
      RawDataFacade io = RawDataFacade.getFacade(raw_dir, cache_dir, rtype);

      int nrflowsSoFar = io.getNrFlowsInCache();
      if (nrflowsSoFar < 0) {
        String raw = io.getRawFilePath(rtype, raw_dir, 0);
        if (raw != null && FileUtils.exists(raw)) {
          p("I could not find the raw file or url " + raw + " (Myabe it's an old experiment?)<br>");
        }
        // else p("Problem with accessing raw file in " + raw_dir + " for type " + rtype + "<br>");
      }
      con.start = nrflowsSoFar;
      // the end is between start and nrfiles so far
    }
    if (msg != null && msg.length() > 0) {
      JOptionPane.showMessageDialog(null, "<html>RawFileConverter<br>" + msg + "</html>");
      conv = null;
      return msg;
    }
    return null;
  }
Exemplo n.º 3
0
 private void initUrl(URL url) {
   //    this.file = file;
   in = FileUtils.openUrl(url);
   if (in == null) {
     err("Could not open url " + url);
   }
   readHeader();
 }