private void updateUserMessage() {
ServiceConnection.instance()
.getUiConfig(
new AsyncCallback<HashMap<String, String>>() {
@Override
public void onFailure(final Throwable throwable) {
displayMessage("");
}
@Override
public void onSuccess(final HashMap<String, String> uiConfig) {
final String message = uiConfig.get(USER_MESSAGE);
displayMessage(message == null ? "" : message);
}
});
}
private void validateOutputPath(final String text) {
ServiceConnection.instance()
.outputFolderExists(
text,
new AsyncCallback<Boolean>() {
@Override
public void onFailure(final Throwable caught) {
outputValidationPanel.removeValidationsFor(output);
}
@Override
public void onSuccess(final Boolean result) {
outputValidationPanel.removeValidationsFor(output);
if (Boolean.TRUE.equals(result)) {
outputValidationPanel.addValidation(
new ClientValidation("Folder exists, will be overwritten"), output);
}
}
});
}
private void initPage(final Integer previousSearchId) {
hidePageContentsWhileLoading();
ServiceConnection.instance()
.getInitialPageData(
previousSearchId,
new AsyncCallback<InitialPageData>() {
@Override
public void onFailure(final Throwable caught) {
// SWALLOWED: Fail
finalizeFileTableInit();
finalizeSpectrumQa(null);
// InitReport fail
DOM.setStyleAttribute(DOM.getElementById("reportingRow"), "display", "none");
showPageContentsAfterLoad();
}
@Override
public void onSuccess(final InitialPageData result) {
previousSearchRunId =
result.loadedSearch() == null ? -1 : result.loadedSearch().getSearchId();
if (previousSearchRunId != -1) {
userEditedTitle = true;
}
initUiConfiguration(result.getUiConfiguration());
initSearchMetadata(
result.loadedSearch() == null
? new HashMap<String, String>()
: result.loadedSearch().getDefinition().getMetadata());
initParamsEditor(result);
finalizeFileTableInit();
finalizeSpectrumQa(result.getSpectrumQaParamFileInfo());
finalizeInitReport(result.isScaffoldReportEnabled(), result.getSearchEngines());
initAdditionalSettings();
initUserList(result.listUsers());
showPageContentsAfterLoad();
initMessage(getConfigurationSetting(USER_MESSAGE));
loadPreviousSearch(result.loadedSearch());
}
});
}
@Override
public void onClick(final ClickEvent event) {
updateUserMessage();
updateOutputLocation();
final String titleText = title.getText();
if (titleText == null) {
Window.alert("No title specified");
title.setFocus(true);
return;
}
if (!titleText.matches(TITLE_ALLOWED)) {
Window.alert(
"The search title "
+ titleText
+ " is invalid. Please use only letters, numbers, - + . _ ( ) [ ] { } = # and a space.");
title.setFocus(true);
return;
}
final String effectiveOutputPath = outputPathUserSpecified ? output.getText() : outputPath;
final String user = users.getValue(users.getSelectedIndex());
final List<ClientFileSearch> fileSearches = getFileSearches();
if (fileSearches == null || fileSearches.isEmpty()) {
Window.alert("No files added to the search");
return;
}
if (effectiveOutputPath == null || "".equals(effectiveOutputPath)) {
Window.alert("The output folder not specified");
return;
}
if ("".equals(user) || user.equals(SELECT_USER_STRING)) {
Window.alert("No user selected");
users.setFocus(true);
return;
}
// The user will likely create a broken output on Windows
if (effectiveOutputPath.length()
+ "/scaffold/".length()
+ titleText.length()
+ ".sf3".length()
> 220) {
Window.alert("The output folder path is too long.");
title.setFocus(true);
return;
}
final ProgressDialogBox dialog = new ProgressDialogBox();
dialog.setProgressMessage("Submitting search...");
dialog.setRelativeSize(0.25, 0.25);
dialog.setMinimumSize(200, 200);
dialog.showModal();
try {
final List<ClientFileSearch> entries = files.getData();
final ClientSpectrumQa clientSpectrumQa;
if (spectrumQaSetupPanel != null) {
clientSpectrumQa = spectrumQaSetupPanel.getParameters();
} else {
clientSpectrumQa = new ClientSpectrumQa();
}
final ClientSwiftSearchDefinition def =
new ClientSwiftSearchDefinition(
getTitleText(),
userInfo.get(users.getValue(users.getSelectedIndex())),
effectiveOutputPath,
paramsEditor.getSelectedParamSet(),
entries,
clientSpectrumQa,
reportSetupPanel == null
? new ClientPeptideReport(false)
: reportSetupPanel.getParameters(),
additionalSettingsPanel.isPublicMgfs(),
additionalSettingsPanel.isPublicMzxmls(),
additionalSettingsPanel.isPublicSearchFiles(),
getSearchMetadata(),
previousSearchRunId);
def.setFromScratch(additionalSettingsPanel.isFromScratch());
def.setLowPriority(additionalSettingsPanel.isLowPriority());
if (additionalSettingsPanel.isMzIdentMl()) {
def.getMetadata().put("mzIdentMl", "1");
}
if (!"".equals(additionalSettingsPanel.getComment())) {
def.getMetadata().put("comment", additionalSettingsPanel.getComment());
} else {
def.getMetadata().remove("comment");
}
ServiceConnection.instance()
.startSearch(
def,
new AsyncCallback<Void>() {
@Override
public void onFailure(final Throwable throwable) {
dialog.hide();
ErrorDialog.handleGlobalError(throwable);
}
@Override
public void onSuccess(final Void o) {
dialog.hide();
redirect("/report/");
}
});
} catch (Exception e) {
dialog.hide();
ErrorDialog.handleGlobalError(e);
}
}
