private void validateIncludes(String name, List<ConceptSetComponent> listToValidate) {
for (ConceptSetComponent nextExclude : listToValidate) {
if (isBlank(nextExclude.getSystem())
&& !ElementUtil.isEmpty(nextExclude.getConcept(), nextExclude.getFilter())) {
throw new InvalidRequestException(
"ValueSet contains " + name + " criteria with no system defined");
}
}
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType,
mySubject,
myOrderer,
myIdentifier,
myEncounter,
myClinicalNotes,
mySpecimen,
myStatus,
myPriority,
myEvent,
myItem);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
mySubject,
myOrderer,
myIdentifier,
myEncounter,
myClinicalNotes,
mySpecimen,
myStatus,
myPriority,
myEvent,
myItem);
}
public boolean isEmpty() {
return super.isEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
identifier,
ruleset,
originalRuleset,
created,
target,
provider,
organization,
request,
response,
paymentStatus,
statusDate);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
myName,
myStatus,
myIssued,
mySubject,
myPerformer,
myIdentifier,
myRequestDetail,
myServiceCategory,
myDiagnostic,
mySpecimen,
myResult,
myImagingStudy,
myImage,
myConclusion,
myCodedDiagnosis,
myPresentedForm);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType,
myName,
myStatus,
myIssued,
mySubject,
myPerformer,
myIdentifier,
myRequestDetail,
myServiceCategory,
myDiagnostic,
mySpecimen,
myResult,
myImagingStudy,
myImage,
myConclusion,
myCodedDiagnosis,
myPresentedForm);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType, myStatus, myDescription, myDateTime, myActor);
}
public boolean isEmpty() {
return super.isEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(low, high);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
myCode, mySpecimen, myBodySite, myStatus, myEvent);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(myValue, myComparator, myUnits, mySystem, myCode);
}
public boolean isEmpty() {
return super.isEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(versionId, lastUpdated, profile, security, tag);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(myReference, myDisplay);
}
public boolean isEmpty() {
return super.isEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
origin, period, factor, lowerLimit, upperLimit, dimensions, data);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myComment, myLink);
}
private void validateQuestionAnswers(
List<ValidationMessage> theErrors,
QuestionComponent theQuestion,
LinkedList<String> thePathStack,
AnswerFormat type,
org.hl7.fhir.instance.model.QuestionnaireResponse.QuestionComponent answerQuestion,
QuestionnaireResponse theAnswers,
boolean theValidateRequired) {
String linkId = theQuestion.getLinkId();
Set<Class<? extends Type>> allowedAnswerTypes = determineAllowedAnswerTypes(type);
if (allowedAnswerTypes.isEmpty()) {
for (QuestionAnswerComponent nextAnswer : answerQuestion.getAnswer()) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
ElementUtil.isEmpty(nextAnswer.getValue()),
"Question with linkId[{0}] has no answer type but an answer was provided",
linkId);
}
} else {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
!(answerQuestion.getAnswer().size() > 1 && !theQuestion.getRepeats()),
"Multiple answers to non repeating question with linkId[{0}]",
linkId);
if (theValidateRequired) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
!(theQuestion.getRequired() && answerQuestion.getAnswer().isEmpty()),
"Missing answer to required question with linkId[{0}]",
linkId);
} else {
hint(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
!(theQuestion.getRequired() && answerQuestion.getAnswer().isEmpty()),
"Missing answer to required question with linkId[{0}]",
linkId);
}
}
int answerIdx = -1;
for (QuestionAnswerComponent nextAnswer : answerQuestion.getAnswer()) {
answerIdx++;
try {
thePathStack.add("answer[" + answerIdx + "]");
Type nextValue = nextAnswer.getValue();
if (nextValue == null) {
continue;
}
if (!allowedAnswerTypes.contains(nextValue.getClass())) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
false,
"Answer to question with linkId[{0}] found of type [{1}] but this is invalid for question of type [{2}]",
linkId,
nextValue.getClass().getSimpleName(),
type.toCode());
continue;
}
// Validate choice answers
if (type == AnswerFormat.CHOICE || type == AnswerFormat.OPENCHOICE) {
if (nextAnswer.getValue() instanceof StringType) {
StringType answer = (StringType) nextAnswer.getValue();
if (answer == null || isBlank(answer.getValueAsString())) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
false,
"Answer to question with linkId[{0}] is required but answer does not have a value",
linkId);
continue;
}
} else {
Coding coding = (Coding) nextAnswer.getValue();
if (isBlank(coding.getCode())) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
false,
"Answer to question with linkId[{0}] is of type {1} but coding answer does not have a code",
linkId,
type.name());
continue;
}
if (isBlank(coding.getSystem())) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
false,
"Answer to question with linkId[{0}] is of type {1} but coding answer does not have a system",
linkId,
type.name());
continue;
}
String optionsRef = theQuestion.getOptions().getReference();
if (isNotBlank(optionsRef)) {
ValueSet valueSet = getValueSet(theAnswers, theQuestion.getOptions());
if (valueSet == null) {
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
false,
"Question with linkId[{0}] has options ValueSet[{1}] but this ValueSet can not be found",
linkId,
optionsRef);
continue;
}
boolean found = false;
if (coding.getSystem().equals(valueSet.getCodeSystem().getSystem())) {
for (ConceptDefinitionComponent next : valueSet.getCodeSystem().getConcept()) {
if (coding.getCode().equals(next.getCode())) {
found = true;
break;
}
}
}
if (!found) {
for (ConceptSetComponent nextCompose : valueSet.getCompose().getInclude()) {
if (coding.getSystem().equals(nextCompose.getSystem())) {
for (ConceptReferenceComponent next : nextCompose.getConcept()) {
if (coding.getCode().equals(next.getCode())) {
found = true;
break;
}
}
}
if (found) {
break;
}
}
}
rule(
theErrors,
IssueType.BUSINESSRULE,
thePathStack,
found,
"Question with linkId[{0}] has answer with system[{1}] and code[{2}] but this is not a valid answer for ValueSet[{3}]",
linkId,
coding.getSystem(),
coding.getCode(),
optionsRef);
}
}
}
} finally {
thePathStack.removeLast();
}
} // for answers
}
@Override
public boolean isEmpty() {
return ca.uhn.fhir.util.ElementUtil.isEmpty(myStatus, myDiv);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(myComment, myLink);
}
public boolean isEmpty() {
return super.isEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(author, item);
}
public boolean isEmpty() {
return super.isEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(type, resource);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType, myValue, myComparator, myUnits, mySystem, myCode);
}
public boolean isEmpty() {
return super.isEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty(id, extension);
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(myStatus, myDescription, myDateTime, myActor);
}
private void encodeResourceToXmlStreamWriter(
IBaseResource theResource,
XMLStreamWriter theEventWriter,
boolean theContainedResource,
String theResourceId)
throws XMLStreamException {
if (!theContainedResource) {
super.containResourcesForEncoding(theResource);
}
RuntimeResourceDefinition resDef = myContext.getResourceDefinition(theResource);
if (resDef == null) {
throw new ConfigurationException("Unknown resource type: " + theResource.getClass());
}
theEventWriter.writeStartElement(resDef.getName());
theEventWriter.writeDefaultNamespace(FHIR_NS);
if (theResource instanceof IAnyResource) {
// HL7.org Structures
encodeCompositeElementToStreamWriter(
theResource, theResource, theEventWriter, resDef, theContainedResource);
} else {
if (myContext.getVersion().getVersion().isNewerThan(FhirVersionEnum.DSTU1)) {
// DSTU2+
IResource resource = (IResource) theResource;
writeOptionalTagWithValue(theEventWriter, "id", theResourceId);
InstantDt updated =
(InstantDt) resource.getResourceMetadata().get(ResourceMetadataKeyEnum.UPDATED);
IdDt resourceId = resource.getId();
String versionIdPart = resourceId.getVersionIdPart();
if (isBlank(versionIdPart)) {
versionIdPart = ResourceMetadataKeyEnum.VERSION.get(resource);
}
List<BaseCodingDt> securityLabels =
extractMetadataListNotNull(resource, ResourceMetadataKeyEnum.SECURITY_LABELS);
List<IdDt> profiles =
extractMetadataListNotNull(resource, ResourceMetadataKeyEnum.PROFILES);
TagList tags = ResourceMetadataKeyEnum.TAG_LIST.get(resource);
if (ElementUtil.isEmpty(versionIdPart, updated, securityLabels, profiles) == false) {
theEventWriter.writeStartElement("meta");
writeOptionalTagWithValue(theEventWriter, "versionId", versionIdPart);
if (updated != null) {
writeOptionalTagWithValue(theEventWriter, "lastUpdated", updated.getValueAsString());
}
for (IdDt profile : profiles) {
theEventWriter.writeStartElement("profile");
theEventWriter.writeAttribute("value", profile.getValue());
theEventWriter.writeEndElement();
}
for (BaseCodingDt securityLabel : securityLabels) {
theEventWriter.writeStartElement("security");
BaseRuntimeElementCompositeDefinition<?> def =
(BaseRuntimeElementCompositeDefinition<?>)
myContext.getElementDefinition(securityLabel.getClass());
encodeCompositeElementChildrenToStreamWriter(
resource, securityLabel, theEventWriter, def.getChildren(), theContainedResource);
theEventWriter.writeEndElement();
}
if (tags != null) {
for (Tag tag : tags) {
theEventWriter.writeStartElement("tag");
writeOptionalTagWithValue(theEventWriter, "system", tag.getScheme());
writeOptionalTagWithValue(theEventWriter, "code", tag.getTerm());
writeOptionalTagWithValue(theEventWriter, "display", tag.getLabel());
theEventWriter.writeEndElement();
}
}
theEventWriter.writeEndElement();
}
if (theResource instanceof IBaseBinary) {
IBaseBinary bin = (IBaseBinary) theResource;
writeOptionalTagWithValue(theEventWriter, "contentType", bin.getContentType());
writeOptionalTagWithValue(theEventWriter, "content", bin.getContentAsBase64());
} else {
encodeResourceToStreamWriterInDstu2Format(
resDef, theResource, theResource, theEventWriter, resDef, theContainedResource);
}
} else {
// DSTU1
if (theResourceId != null && theContainedResource) {
theEventWriter.writeAttribute("id", theResourceId);
}
if (theResource instanceof IBaseBinary) {
IBaseBinary bin = (IBaseBinary) theResource;
if (bin.getContentType() != null) {
theEventWriter.writeAttribute("contentType", bin.getContentType());
}
theEventWriter.writeCharacters(bin.getContentAsBase64());
} else {
encodeCompositeElementToStreamWriter(
theResource, theResource, theEventWriter, resDef, theContainedResource);
}
}
}
theEventWriter.writeEndElement();
}
@Override
public boolean isEmpty() {
return super.isBaseEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(
myUse, myLabel, mySystem, myValue, myPeriod, myAssigner);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myReference, myDisplay);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType, myUse, myLabel, mySystem, myValue, myPeriod, myAssigner);
}
public boolean isEmpty() {
return super.isEmpty()
&& ca.uhn.fhir.util.ElementUtil.isEmpty(value, comparator, unit, system, code);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType, myCode, mySpecimen, myBodySite, myStatus, myEvent);
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(
theType, mySystem, myVersion, myCode, myDisplay, myPrimary);
}