Exemplo n.º 1
0
 /**
  * Gene Pair Analysis (GPA) by Common Chips, of biclusters in the <code>list.idx</code>. Each gene
  * pair obtains a score, which is the maximum size of the chip set, where the two genes are
  * co-biclustered.
  *
  * <p>Additionally, updates the dataset list with obtained results.
  */
 public HashMap gpaByCommonChips(LinkedList bcList, int minCommonScore) {
   return AnalysisUtil.gpaByCommonChips(minCommonScore, bcList);
 }
Exemplo n.º 2
0
 /**
  * Gene Pair Analysis (GPA) by Cooccurrence, of biclusters in the <code>list.idx</code>. Each gene
  * pair obtains a score, which is a frequence of co-occurrence in considered biclusters.
  *
  * <p>Additionally, updates the dataset list with obtained results.
  *
  * @throws Exception
  */
 public HashMap gpaByCoocurrence(LinkedList bcList, int minCoocScore, Dataset dataset)
     throws Exception {
   return AnalysisUtil.gpaByCoocurrence(minCoocScore, bcList, dataset);
 }