/**
* Gene Pair Analysis (GPA) by Common Chips, of biclusters in the <code>list.idx</code>. Each gene
* pair obtains a score, which is the maximum size of the chip set, where the two genes are
* co-biclustered.
*
* <p>Additionally, updates the dataset list with obtained results.
*/
public HashMap gpaByCommonChips(LinkedList bcList, int minCommonScore) {
return AnalysisUtil.gpaByCommonChips(minCommonScore, bcList);
}
/**
* Gene Pair Analysis (GPA) by Cooccurrence, of biclusters in the <code>list.idx</code>. Each gene
* pair obtains a score, which is a frequence of co-occurrence in considered biclusters.
*
* <p>Additionally, updates the dataset list with obtained results.
*
* @throws Exception
*/
public HashMap gpaByCoocurrence(LinkedList bcList, int minCoocScore, Dataset dataset)
throws Exception {
return AnalysisUtil.gpaByCoocurrence(minCoocScore, bcList, dataset);
}