/** Deprecated, please use {@link #open(String, String, ProgressWriter)} instead. */
@Deprecated
public BigDataViewer(
final String xmlFilename, final String windowTitle, final ProgressWriter progressWriter)
throws SpimDataException {
this(new XmlIoSpimDataMinimal().load(xmlFilename), windowTitle, progressWriter);
if (!tryLoadSettings(xmlFilename))
InitializeViewerState.initBrightness(0.001, 0.999, viewer, setupAssignments);
}
/** Deprecated, please use {@link #open(AbstractSpimData, String, ProgressWriter)} instead. */
@Deprecated
public BigDataViewer(
final AbstractSpimData<?> spimData,
final String windowTitle,
final ProgressWriter progressWriter) {
this(new ForDeprecatedConstructors(spimData, windowTitle, progressWriter));
viewerFrame.setVisible(true);
InitializeViewerState.initTransform(viewer);
}
public static BigDataViewer open(
final String xmlFilename, final String windowTitle, final ProgressWriter progressWriter)
throws SpimDataException {
final SpimDataMinimal spimData = new XmlIoSpimDataMinimal().load(xmlFilename);
final BigDataViewer bdv = open(spimData, windowTitle, progressWriter);
if (!bdv.tryLoadSettings(xmlFilename))
InitializeViewerState.initBrightness(0.001, 0.999, bdv.viewer, bdv.setupAssignments);
return bdv;
}
public static BigDataViewer open(
final ArrayList<ConverterSetup> converterSetups,
final ArrayList<SourceAndConverter<?>> sources,
final int numTimepoints,
final Cache cache,
final String windowTitle,
final ProgressWriter progressWriter) {
final BigDataViewer bdv =
new BigDataViewer(
converterSetups,
sources,
null,
numTimepoints,
cache,
windowTitle,
800,
600,
progressWriter);
bdv.viewerFrame.setVisible(true);
InitializeViewerState.initTransform(bdv.viewer);
return bdv;
}
public static BigDataViewer open(
final AbstractSpimData<?> spimData,
final String windowTitle,
final ProgressWriter progressWriter) {
final int width = 800;
final int height = 600;
if (WrapBasicImgLoader.wrapImgLoaderIfNecessary(spimData)) {
System.err.println(
"WARNING:\nOpening <SpimData> dataset that is not suited for interactive browsing.\nConsider resaving as HDF5 for better performance.");
}
final ArrayList<ConverterSetup> converterSetups = new ArrayList<ConverterSetup>();
final ArrayList<SourceAndConverter<?>> sources = new ArrayList<SourceAndConverter<?>>();
initSetups(spimData, converterSetups, sources);
final AbstractSequenceDescription<?, ?, ?> seq = spimData.getSequenceDescription();
final int numTimepoints = seq.getTimePoints().size();
final Cache cache = ((ViewerImgLoader<?, ?>) seq.getImgLoader()).getCache();
final BigDataViewer bdv =
new BigDataViewer(
converterSetups,
sources,
spimData,
numTimepoints,
cache,
windowTitle,
width,
height,
progressWriter);
WrapBasicImgLoader.removeWrapperIfPresent(spimData);
bdv.viewerFrame.setVisible(true);
InitializeViewerState.initTransform(bdv.viewer);
return bdv;
}