public AffectionContainerPanel(String id, WebMarkupContainer arkContextMarkup) {
super(id);
this.arkContextMarkup = arkContextMarkup;
cpModel = new CompoundPropertyModel<AffectionVO>(new AffectionVO());
sessionStudyID =
(Long) SecurityUtils.getSubject().getSession().getAttribute(Constants.STUDY_CONTEXT_ID);
if (sessionStudyID != null) {
study = iArkCommonService.getStudy(sessionStudyID);
}
Long subjectSessionID =
(Long) SecurityUtils.getSubject().getSession().getAttribute(Constants.PERSON_CONTEXT_ID);
try {
linkSubjectStudy = iArkCommonService.getSubject(subjectSessionID, study);
} catch (EntityNotFoundException e) {
e.printStackTrace();
}
containerForm = new ContainerForm("containerForm", cpModel);
containerForm.add(initialiseFeedBackPanel());
containerForm.add(initialiseDetailPanel());
containerForm.add(initialiseSearchResults());
containerForm.add(initialiseSearchPanel());
add(containerForm);
}
@Override
protected void onSearch(AjaxRequestTarget target) {
target.add(feedbackPanel);
// Set study in context
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
// Get a list of all Fields for the Study in context
Study study = iArkCommonService.getStudy(studyId);
Upload searchUpload = getModelObject().getUpload();
searchUpload.setStudy(study);
searchUpload.setArkFunction(
iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_DATA_DICTIONARY));
Collection<Upload> uploadCollection = iArkCommonService.searchUploads(searchUpload);
if (uploadCollection != null && uploadCollection.size() == 0) {
this.info("Uploads with the specified criteria does not exist in the system.");
target.add(feedbackPanel);
}
getModelObject().setUploadCollection(uploadCollection);
listView.removeAll();
arkCrudContainerVO.getSearchResultPanelContainer().setVisible(true);
target.add(arkCrudContainerVO.getSearchResultPanelContainer());
}
/** @param id */
public SubjectSubMenuTab(String id, WebMarkupContainer arkContextMarkup) {
super(id);
this.arkContextMarkup = arkContextMarkup;
new ArrayList<ITab>();
buildTabs();
Long sessionStudyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(sessionStudyId);
childStudy = study.getParentStudy() != null && (study != study.getParentStudy());
}
/*
* (non-Javadoc)
*
* @see au.org.theark.core.web.form.AbstractDetailForm#onSave(org.apache.wicket.markup.html.form.Form, org.apache.wicket.ajax.AjaxRequestTarget)
*/
@Override
protected void onSave(Form<CustomFieldGroupVO> containerForm, AjaxRequestTarget target) {
if (getModelObject().getCustomFieldGroup().getId() == null) {
// Create
ArkFunction arkFunction =
iArkCommonService.getArkFunctionByName(
au.org.theark.core.Constants.FUNCTION_KEY_VALUE_PHENO_COLLECTION);
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(studyId);
getModelObject().getCustomFieldGroup().setArkFunction(arkFunction);
getModelObject().getCustomFieldGroup().setStudy(study);
try {
iPhenotypicService.createCustomFieldGroup(getModelObject());
initCustomFieldDataListPanel();
this.info("Data Set has been created successfully.");
} catch (EntityExistsException e) {
this.error("A Data Set with the same name already exisits. Please choose a unique one.");
} catch (ArkSystemException e) {
this.error("A System error occured. Please contact Administrator.");
}
} else {
try {
iPhenotypicService.updateCustomFieldGroup(getModelObject());
initCustomFieldDataListPanel();
this.info("Data Set has been updated successfully.");
} catch (EntityExistsException e) {
this.error("A Data Set with the same name already exisits. Please choose a unique one.");
e.printStackTrace();
} catch (ArkSystemException e) {
this.error("A System error occured. Please contact Administrator.");
e.printStackTrace();
}
}
target.add(
arkCrudContainerVO
.getWmcForCustomFieldDisplayListPanel()); // Repaint this List of Custom Field Displays
onSavePostProcess(target); // Post process
}
@SuppressWarnings("unchecked")
private void setSelectedCustomFieldsFromFile() {
if (fileUploadField.getFileUpload() != null) {
ArkFunction arkFunction =
iArkCommonService.getArkFunctionByName(
au.org.theark.core.Constants.FUNCTION_KEY_VALUE_PHENO_COLLECTION);
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(studyId);
ArrayList<CustomField> selectedCustomFields =
(ArrayList<CustomField>)
iArkCommonService.matchCustomFieldsFromInputFile(
fileUploadField.getFileUpload(), study, arkFunction);
cpModel.getObject().setSelectedCustomFields(selectedCustomFields);
}
initCustomFieldPalette();
arkCrudContainerVO.getDetailPanelFormContainer().addOrReplace(customFieldPalette);
}
protected boolean prerenderContextCheck() {
Long sessionPersonId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
Long sessionStudyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
boolean contextLoaded = false;
if ((sessionStudyId != null) && (sessionPersonId != null)) {
String sessionPersonType =
(String)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_TYPE);
if (sessionPersonType.equals(au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) {
LinkSubjectStudy lss;
try {
Study study = iArkCommonService.getStudy(sessionStudyId);
lss = iArkCommonService.getSubject(sessionPersonId, study);
contextLoaded = true;
} catch (EntityNotFoundException e) {
log.error(e.getMessage());
}
if (contextLoaded) {
arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
}
}
}
return contextLoaded;
}
/*
* (non-Javadoc)
*
* @see au.org.theark.core.web.form.AbstractDetailForm#onSave(org.apache.wicket.markup.html.form.Form, org.apache.wicket.ajax.AjaxRequestTarget)
*/
@Override
protected void onSave(Form<ContactVO> containerForm, AjaxRequestTarget target) {
// Persist the phone number to the backend, associate the person in context with the phone
// object
Long personSessionId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
// Get the person and set it on the Phone object.
try {
boolean saveOk = true;
Person person = studyService.getPerson(personSessionId);
containerForm.getModelObject().getPhoneVo().getPhone().setPerson(person);
/*
// Make the area code mandatory only for landline phone (home/work) entries
String phType = containerForm.getModelObject().getPhone().getPhoneType().getName().toLowerCase();
if (!phType.equals("mobile")) {
// must be landline
if (containerForm.getModelObject().getPhone().getAreaCode() == null || containerForm.getModelObject().getPhone().getAreaCode().length() < 1) {
this.error("An area code must be entered for landline numbers");
saveOk = false;
}
}
*/
if (saveOk) {
// Ok to save...
String personType =
(String)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_TYPE);
if (personType != null
&& personType.equalsIgnoreCase(
au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) {
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(studyId);
LinkSubjectStudy subjectInContext =
iArkCommonService.getSubject(
personSessionId, study); // This is fetched basically to display the
// info
// message along with the Subject UID or Contact ID
if (containerForm.getModelObject().getPhoneVo().getPhone().getId() == null) {
studyService.create(containerForm.getModelObject().getPhoneVo().getPhone());
this.info(
"Phone number was added and linked to Subject UID: "
+ subjectInContext.getSubjectUID());
} else {
studyService.update(containerForm.getModelObject().getPhoneVo().getPhone());
this.info(
"Phone number was updated and linked to Subject UID: "
+ subjectInContext.getSubjectUID());
}
} else if (personType != null
&& personType.equalsIgnoreCase(
au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_CONTACT)) {
// TODO: Contact Interface implementation
}
processErrors(target);
onSavePostProcess(target);
} else {
processErrors(target);
}
} catch (ArkUniqueException aue) {
this.error(aue.getMessage());
} catch (EntityNotFoundException e) {
this.error("The Subject/Participant is not available in the system anymore");
} catch (ArkSystemException e) {
this.error("A System Exception has occured please contact Support.");
}
}
