public VelocityContext getBioCollectionLabelContext(BioCollection bioCollection) {
VelocityContext velocityContext = new VelocityContext();
LinkSubjectStudy linkSubjectStudy = null;
try {
linkSubjectStudy =
iArkCommonService.getSubjectByUID(
bioCollection.getLinkSubjectStudy().getSubjectUID(), bioCollection.getStudy());
} catch (EntityNotFoundException e) {
log.error(e.getMessage());
}
try {
bioCollection = iBioCollectionDao.getBioCollection(bioCollection.getId());
} catch (EntityNotFoundException e) {
log.error(e.getMessage());
}
String subjectUid = linkSubjectStudy.getSubjectUID();
// ArkFunction arkFunction =
// iArkCommonService.getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_COLLECTION);
ArkFunction arkFunction =
iArkCommonService.getArkFunctionByName(
au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);
// Custom field name "FAMILYID"
BioCollectionCustomFieldData bioCollectionCustomFieldData =
iBioCollectionDao.getBioCollectionCustomFieldData(bioCollection, arkFunction, "FAMILYID");
String familyId = bioCollectionCustomFieldData.getTextDataValue();
// Custom field name "ASRBNO"
bioCollectionCustomFieldData =
iBioCollectionDao.getBioCollectionCustomFieldData(bioCollection, arkFunction, "ASRBNO");
String asrbno = bioCollectionCustomFieldData.getTextDataValue();
String collectionDate = new String();
if (bioCollection.getCollectionDate() != null) {
collectionDate = simpleDateFormat.format(bioCollection.getCollectionDate());
}
String refDoctor = new String();
if (bioCollection.getRefDoctor() != null) {
refDoctor = bioCollection.getRefDoctor();
}
String dateOfBirth = new String();
if (bioCollection.getLinkSubjectStudy().getPerson().getDateOfBirth() != null) {
dateOfBirth =
simpleDateFormat.format(bioCollection.getLinkSubjectStudy().getPerson().getDateOfBirth());
}
String sex = new String();
if (bioCollection.getLinkSubjectStudy().getPerson().getGenderType() != null) {
sex = bioCollection.getLinkSubjectStudy().getPerson().getGenderType().getName();
}
String collectionID = bioCollection.getBiocollectionUid();
String subjectFirstName = linkSubjectStudy.getPerson().getFirstName();
String subjectLastName = linkSubjectStudy.getPerson().getLastName();
String initials = subjectFirstName.charAt(0) + "" + subjectLastName.charAt(0);
velocityContext.put("initials", initials);
velocityContext.put("firstName", subjectFirstName);
velocityContext.put("lastName", subjectLastName);
velocityContext.put("collectionID", collectionID);
velocityContext.put("subjectUid", subjectUid);
velocityContext.put("familyId", familyId);
velocityContext.put("asrbno", asrbno);
velocityContext.put("collectionDate", collectionDate);
velocityContext.put("refDoctor", refDoctor);
velocityContext.put("dateOfBirth", dateOfBirth);
velocityContext.put("sex", sex);
return velocityContext;
}
