public void setGene(AnnotatedFeatureI g) {
this.gene = g;
if (g == null) return;
if (!g.isProteinCodingGene()) {
setText("NOT A PEPTIDE");
setEnabled(false);
} else {
setEnabled(true);
Hashtable curator_values = Config.getPeptideStates();
String pep_status = g.getProperty("sp_status");
PeptideStatus this_status = Config.getPeptideStatus(pep_status);
JMenuItem item;
/* these are the computed values that cannot be over-ridden
by a curator
*/
item = new JMenuItem(this_status.getText());
add(item);
item.addActionListener(this);
/* these are the possible values to be selected
by a curator */
Enumeration e = curator_values.keys();
while (e.hasMoreElements()) {
String key = (String) e.nextElement();
PeptideStatus a_status = (PeptideStatus) curator_values.get(key);
if (a_status.getPrecedence() >= this_status.getPrecedence()
&& !a_status.getText().equals(this_status.getText())
&& a_status.getCurated()) {
item = new JMenuItem(a_status.getText());
add(item);
item.addActionListener(this);
}
}
setText(this_status.getText());
}
}
