@Before
public void setUp() {
sequence = new Sequence();
sequence.setLength(42);
Options options = new Options();
options.setBaseUrl("baseUrl");
sequence.setOptions(options);
Markup markup = new Markup();
markup.setStart(24);
sequence.setMarkups(ImmutableList.of(markup));
Map<String, Object> metadata = newHashMap();
metadata.put("key", "value");
sequence.setMetadata(metadata);
Motif motif = new Motif();
motif.setStart(24);
sequence.setMotifs(ImmutableList.of(motif));
Region region = new Region();
region.setStart(24);
sequence.setRegions(ImmutableList.of(region));
}
@Test
public void testWithMarkupsNullMarkups() {
sequence.setMarkups(null);
Sequence withMarkups = sequence.withMarkups(null);
assertNull(withMarkups.getMarkups());
}
@Test
public void testDeepCopyNullMarkups() {
sequence.setMarkups(null);
Sequence copy = sequence.deepCopy();
assertNull(copy.getMarkups());
}