public void map(
LongWritable key,
Text t,
OutputCollector<IntWritable, PageRankNode> output,
Reporter reporter)
throws IOException {
String[] arr = t.toString().trim().split("\\s+");
nid.set(Integer.parseInt(arr[0]));
if (arr.length == 1) {
node.setNodeId(Integer.parseInt(arr[0]));
node.setAdjacencyList(new ArrayListOfIntsWritable());
} else {
node.setNodeId(Integer.parseInt(arr[0]));
int[] neighbors = new int[arr.length - 1];
for (int i = 1; i < arr.length; i++) {
neighbors[i - 1] = Integer.parseInt(arr[i]);
}
node.setAdjacencyList(new ArrayListOfIntsWritable(neighbors));
}
reporter.incrCounter("graph", "numNodes", 1);
reporter.incrCounter("graph", "numEdges", arr.length - 1);
if (arr.length > 1) {
reporter.incrCounter("graph", "numActiveNodes", 1);
}
output.collect(nid, node);
}
@Override
public void map(IntWritable nid, PageRankNode node, Context context)
throws IOException, InterruptedException {
float p = node.getPageRank();
float jump = (float) (Math.log(ALPHA) - Math.log(nodeCnt));
float link =
(float) Math.log(1.0f - ALPHA)
+ sumLogProbs(p, (float) (Math.log(missingMass) - Math.log(nodeCnt)));
p = sumLogProbs(jump, link);
node.setPageRank(p);
context.write(nid, node);
}
@Override
public void cleanup(Context context) throws IOException, InterruptedException {
// Now emit the messages all at once.
IntWritable k = new IntWritable();
PageRankNode mass = new PageRankNode();
for (MapIF.Entry e : map.entrySet()) {
k.set(e.getKey());
mass.setNodeId(e.getKey());
mass.setType(PageRankNode.Type.Mass);
mass.setPageRank(e.getValue());
context.write(k, mass);
}
}
public void write(DataOutput out) throws IOException {
out.writeBoolean(isNode);
if (node != null) {
node.write(out);
} else {
contribution.write(out);
}
}
public void readFields(DataInput in) throws IOException {
isNode = in.readBoolean();
if (isNode) {
node = new PageRankNode();
node.readFields(in);
} else {
contribution = new Contribution();
contribution.readFields(in);
}
}
@Override
public void reduce(IntWritable nid, Iterable<PageRankNode> values, Context context)
throws IOException, InterruptedException {
int massMessages = 0;
// Remember, PageRank mass is stored as a log prob.
float mass = Float.NEGATIVE_INFINITY;
for (PageRankNode n : values) {
if (n.getType() == PageRankNode.Type.Structure) {
// Simply pass along node structure.
context.write(nid, n);
} else {
// Accumulate PageRank mass contributions.
mass = sumLogProbs(mass, n.getPageRank());
massMessages++;
}
}
// Emit aggregated results.
if (massMessages > 0) {
intermediateMass.setNodeId(nid.get());
intermediateMass.setType(PageRankNode.Type.Mass);
intermediateMass.setPageRank(mass);
context.write(nid, intermediateMass);
}
}
@Override
public void map(IntWritable nid, PageRankNode node, Context context)
throws IOException, InterruptedException {
// Pass along node structure.
intermediateStructure.setNodeId(node.getNodeId());
intermediateStructure.setType(PageRankNode.Type.Structure);
intermediateStructure.setAdjacencyList(node.getAdjacenyList());
context.write(nid, intermediateStructure);
int massMessages = 0;
int massMessagesSaved = 0;
// Distribute PageRank mass to neighbors (along outgoing edges).
if (node.getAdjacenyList().size() > 0) {
// Each neighbor gets an equal share of PageRank mass.
ArrayListOfIntsWritable list = node.getAdjacenyList();
float mass = node.getPageRank() - (float) StrictMath.log(list.size());
context.getCounter(PageRank.edges).increment(list.size());
// Iterate over neighbors.
for (int i = 0; i < list.size(); i++) {
int neighbor = list.get(i);
if (map.containsKey(neighbor)) {
// Already message destined for that node; add PageRank mass contribution.
massMessagesSaved++;
map.put(neighbor, sumLogProbs(map.get(neighbor), mass));
} else {
// New destination node; add new entry in map.
massMessages++;
map.put(neighbor, mass);
}
}
}
// Bookkeeping.
context.getCounter(PageRank.nodes).increment(1);
context.getCounter(PageRank.massMessages).increment(massMessages);
context.getCounter(PageRank.massMessagesSaved).increment(massMessagesSaved);
}
public void configure(JobConf job) {
int n = job.getInt("NodeCnt", 0);
node.setType(PageRankNode.TYPE_COMPLETE);
node.setPageRank((float) -StrictMath.log(n));
}
@Override
public void map(IntWritable nid, PageRankNode node, Context context)
throws IOException, InterruptedException {
// Pass along node structure.
intermediateStructure.setNodeId(node.getNodeId());
intermediateStructure.setType(PageRankNode.Type.Structure);
intermediateStructure.setAdjacencyList(node.getAdjacenyList());
context.write(nid, intermediateStructure);
int massMessages = 0;
// Distribute PageRank mass to neighbors (along outgoing edges).
if (node.getAdjacenyList().size() > 0) {
// Each neighbor gets an equal share of PageRank mass.
ArrayListOfIntsWritable list = node.getAdjacenyList();
float mass = node.getPageRank() - (float) StrictMath.log(list.size());
context.getCounter(PageRank.edges).increment(list.size());
// Iterate over neighbors.
for (int i = 0; i < list.size(); i++) {
neighbor.set(list.get(i));
intermediateMass.setNodeId(list.get(i));
intermediateMass.setType(PageRankNode.Type.Mass);
intermediateMass.setPageRank(mass);
// Emit messages with PageRank mass to neighbors.
context.write(neighbor, intermediateMass);
massMessages++;
}
}
// Bookkeeping.
context.getCounter(PageRank.nodes).increment(1);
context.getCounter(PageRank.massMessages).increment(massMessages);
}
@Override
public void reduce(IntWritable nid, Iterable<PageRankNode> iterable, Context context)
throws IOException, InterruptedException {
Iterator<PageRankNode> values = iterable.iterator();
// Create the node structure that we're going to assemble back together from shuffled pieces.
PageRankNode node = new PageRankNode();
node.setType(PageRankNode.Type.Complete);
node.setNodeId(nid.get());
int massMessagesReceived = 0;
int structureReceived = 0;
float mass = Float.NEGATIVE_INFINITY;
while (values.hasNext()) {
PageRankNode n = values.next();
if (n.getType().equals(PageRankNode.Type.Structure)) {
// This is the structure; update accordingly.
ArrayListOfIntsWritable list = n.getAdjacenyList();
structureReceived++;
node.setAdjacencyList(list);
} else {
// This is a message that contains PageRank mass; accumulate.
mass = sumLogProbs(mass, n.getPageRank());
massMessagesReceived++;
}
}
// Update the final accumulated PageRank mass.
node.setPageRank(mass);
context.getCounter(PageRank.massMessagesReceived).increment(massMessagesReceived);
// Error checking.
if (structureReceived == 1) {
// Everything checks out, emit final node structure with updated PageRank value.
context.write(nid, node);
// Keep track of total PageRank mass.
totalMass = sumLogProbs(totalMass, mass);
} else if (structureReceived == 0) {
// We get into this situation if there exists an edge pointing to a node which has no
// corresponding node structure (i.e., PageRank mass was passed to a non-existent node)...
// log and count but move on.
context.getCounter(PageRank.missingStructure).increment(1);
LOG.warn(
"No structure received for nodeid: " + nid.get() + " mass: " + massMessagesReceived);
// It's important to note that we don't add the PageRank mass to total... if PageRank mass
// was sent to a non-existent node, it should simply vanish.
} else {
// This shouldn't happen!
throw new RuntimeException(
"Multiple structure received for nodeid: "
+ nid.get()
+ " mass: "
+ massMessagesReceived
+ " struct: "
+ structureReceived);
}
}