/**
* {@collect.stats} Filters an IndexColorModel object by running each entry in its color tables
* through the filterRGB function that RGBImageFilter subclasses must provide. Uses coordinates of
* -1 to indicate that a color table entry is being filtered rather than an actual pixel value.
*
* @param icm the IndexColorModel object to be filtered
* @exception NullPointerException if <code>icm</code> is null
* @return a new IndexColorModel representing the filtered colors
*/
public IndexColorModel filterIndexColorModel(IndexColorModel icm) {
int mapsize = icm.getMapSize();
byte r[] = new byte[mapsize];
byte g[] = new byte[mapsize];
byte b[] = new byte[mapsize];
byte a[] = new byte[mapsize];
icm.getReds(r);
icm.getGreens(g);
icm.getBlues(b);
icm.getAlphas(a);
int trans = icm.getTransparentPixel();
boolean needalpha = false;
for (int i = 0; i < mapsize; i++) {
int rgb = filterRGB(-1, -1, icm.getRGB(i));
a[i] = (byte) (rgb >> 24);
if (a[i] != ((byte) 0xff) && i != trans) {
needalpha = true;
}
r[i] = (byte) (rgb >> 16);
g[i] = (byte) (rgb >> 8);
b[i] = (byte) (rgb >> 0);
}
if (needalpha) {
return new IndexColorModel(icm.getPixelSize(), mapsize, r, g, b, a);
} else {
return new IndexColorModel(icm.getPixelSize(), mapsize, r, g, b, trans);
}
}
void setHistogram(ImagePlus imp, int j) {
ImageProcessor ip = imp.getProcessor();
ImageStatistics stats = ImageStatistics.getStatistics(ip, AREA + MODE, null);
int maxCount2 = 0;
histogram = stats.histogram;
for (int i = 0; i < stats.nBins; i++)
if ((histogram[i] > maxCount2) && (i != stats.mode)) maxCount2 = histogram[i];
hmax = stats.maxCount;
if ((hmax > (maxCount2 * 1.5)) && (maxCount2 != 0)) { // GL 1.5 was 2
hmax = (int) (maxCount2 * 1.1); // GL 1.1 was 1.5
histogram[stats.mode] = hmax;
}
os = null;
ColorModel cm = ip.getColorModel();
if (!(cm instanceof IndexColorModel)) return;
IndexColorModel icm = (IndexColorModel) cm;
int mapSize = icm.getMapSize();
if (mapSize != 256) return;
byte[] r = new byte[256];
byte[] g = new byte[256];
byte[] b = new byte[256];
icm.getReds(r);
icm.getGreens(g);
icm.getBlues(b);
hColors = new Color[256];
if (isRGB) {
if (j == 0) {
for (int i = 0; i < 256; i++) hColors[i] = new Color(i & 255, 0 & 255, 0 & 255);
} else if (j == 1) {
for (int i = 0; i < 256; i++) hColors[i] = new Color(0 & 255, i & 255, 0 & 255);
} else if (j == 2) {
for (int i = 0; i < 256; i++) hColors[i] = new Color(0 & 255, 0 & 255, i & 255);
}
} else {
if (j == 0) {
for (int i = 0; i < 256; i++) hColors[i] = new Color(r[i] & 255, g[i] & 255, b[i] & 255);
} else if (j == 1) {
for (int i = 0; i < 256; i++)
// hColors[i] = new Color(127-i/2&255, 127+i/2&255, 127-i/2&255);
hColors[i] = new Color(192 - i / 4 & 255, 192 + i / 4 & 255, 192 - i / 4 & 255);
} else if (j == 2) {
for (int i = 0; i < 256; i++) hColors[i] = new Color(i & 255, i & 255, 0 & 255);
}
}
}
public boolean dispose() {
if (decoder.imageComplete(ImageConsumer.SINGLEFRAMEDONE, false) == 0) {
return false;
} else {
if (delay > 0) {
try {
if (verbose) {
System.out.println("sleeping: " + delay);
}
Thread.sleep(delay);
} catch (InterruptedException e) {
return false;
}
} else {
Thread.yield();
}
if (verbose && disposal_method != 0) {
System.out.println("disposal method: " + disposal_method);
}
int global_width = decoder.global_width;
int global_height = decoder.global_height;
if (x < 0) {
width += x;
x = 0;
}
if (x + width > global_width) {
width = global_width - x;
}
if (width <= 0) {
disposal_method = DISPOSAL_NONE;
} else {
if (y < 0) {
height += y;
y = 0;
}
if (y + height > global_height) {
height = global_height - y;
}
if (height <= 0) {
disposal_method = DISPOSAL_NONE;
}
}
switch (disposal_method) {
case DISPOSAL_PREVIOUS:
byte[] saved_image = decoder.saved_image;
IndexColorModel saved_model = decoder.saved_model;
if (saved_image != null) {
setPixels(
x, y, width, height, saved_model, saved_image, y * global_width + x, global_width);
}
break;
case DISPOSAL_BGCOLOR:
byte tpix;
if (model.getTransparentPixel() < 0) {
model = trans_model;
if (model == null) {
model = new IndexColorModel(8, 1, new byte[4], 0, true);
trans_model = model;
}
tpix = 0;
} else {
tpix = (byte) model.getTransparentPixel();
}
int rassize = width * height;
byte[] rasfill = new byte[rassize];
if (tpix != 0) {
for (int i = 0; i < rassize; i++) {
rasfill[i] = tpix;
}
}
// setPixels(x, y, width, height, model, rasfill, 0, 0);
setPixels(x, y, width, height, model, rasfill, 0, width);
break;
case DISPOSAL_SAVE:
decoder.saved_model = model;
break;
}
}
return true;
}
/** Read Image data */
private boolean readImage(boolean first, int disposal_method, int delay) throws IOException {
if (curframe != null && !curframe.dispose()) {
abort();
return false;
}
long tm = 0;
if (verbose) {
tm = System.currentTimeMillis();
}
// Allocate the buffer
byte block[] = new byte[256 + 3];
// Read the image descriptor
if (readBytes(block, 0, 10) != 0) {
throw new IOException();
}
int x = ExtractWord(block, 0);
int y = ExtractWord(block, 2);
int width = ExtractWord(block, 4);
int height = ExtractWord(block, 6);
boolean interlace = (block[8] & INTERLACEMASK) != 0;
IndexColorModel model = global_model;
if ((block[8] & COLORMAPMASK) != 0) {
// We read one extra byte above so now when we must
// transfer that byte as the first colormap byte
// and manually read the code size when we are done
int num_local_colors = 1 << ((block[8] & 0x7) + 1);
// Read local colors
byte[] local_colormap = new byte[num_local_colors * 3];
local_colormap[0] = block[9];
if (readBytes(local_colormap, 1, num_local_colors * 3 - 1) != 0) {
throw new IOException();
}
// Now read the "real" code size byte which follows
// the local color table
if (readBytes(block, 9, 1) != 0) {
throw new IOException();
}
model = new IndexColorModel(8, num_local_colors, local_colormap, 0, false, trans_pixel);
} else if (model == null || trans_pixel != model.getTransparentPixel()) {
model = new IndexColorModel(8, num_global_colors, global_colormap, 0, false, trans_pixel);
global_model = model;
}
// Notify the consumers
if (first) {
if (global_width == 0) global_width = width;
if (global_height == 0) global_height = height;
setDimensions(global_width, global_height);
setProperties(props);
setColorModel(model);
headerComplete();
}
if (disposal_method == GifFrame.DISPOSAL_SAVE && saved_image == null) {
saved_image = new byte[global_width * global_height];
}
int hints = (interlace ? interlaceflags : normalflags);
setHints(hints);
curframe =
new GifFrame(this, disposal_method, delay, (curframe == null), model, x, y, width, height);
// allocate the raster data
byte rasline[] = new byte[width];
if (verbose) {
System.out.print(
"Reading a "
+ width
+ " by "
+ height
+ " "
+ (interlace ? "" : "non-")
+ "interlaced image...");
}
boolean ret =
parseImage(x, y, width, height, interlace, ExtractByte(block, 9), block, rasline, model);
if (!ret) {
abort();
}
if (verbose) {
System.out.println("done in " + (System.currentTimeMillis() - tm) + "ms");
}
return ret;
}
/*
* This is converted from the native version. The java version is
* much faster when we have JIT.
*/
private boolean parseImage(
int relx,
int rely,
int width,
int height,
boolean interlace,
int initCodeSize,
byte block[],
byte rasline[],
IndexColorModel model) {
int OUTCODELENGTH = 4097;
int clearCode = (1 << initCodeSize);
int eofCode = clearCode + 1;
int bitMask;
int curCode;
int outCount = OUTCODELENGTH;
/* Variables used to form reading data */
boolean blockEnd = false;
int remain = 0;
int byteoff = 0;
int accumbits = 0;
int accumdata = 0;
/* Variables used to decompress the data */
int codeSize = initCodeSize + 1;
int maxCode = 1 << codeSize;
int codeMask = maxCode - 1;
int freeCode = clearCode + 2;
int code = 0;
int oldCode = 0;
char prevChar = 0;
// int blockLength = 0;
int blockLength = 0;
/* Variables used for writing pixels */
int x = width;
int y = 0;
int off = 0;
int passinc = interlace ? 8 : 1;
int passht = passinc;
int len;
bitMask = model.getMapSize() - 1;
/* Read codes until the eofCode is encountered */
for (; ; ) {
if (accumbits < codeSize) {
boolean lastByte = false;
/* fill the buffer if needed */
while (remain < 2) {
if (blockEnd) {
/* Sometimes we have one last byte to process... */
if (remain == 1 && accumbits + 8 >= codeSize) {
break;
}
if (off > 0) {
// sendPixels(relx, rely+y, width, passht, rasline,
// model);
sendPixels(relx, rely + y, width, 1, rasline, model);
}
/* quietly accept truncated GIF images */
return false;
}
/* move remaining bytes to the beginning of the buffer */
block[0] = block[byteoff];
byteoff = 0;
/* fill the block */
len = readBytes(block, remain, blockLength + 1);
remain += blockLength;
if (len > 0) {
remain -= (len - 1);
blockLength = 0;
} else {
blockLength = (block[remain] & 0xff);
}
if (blockLength == 0) {
blockEnd = true;
}
}
/* 2 bytes at a time saves checking for accumbits < codeSize.
* We know we'll get enough and also that we can't overflow
* since codeSize <= 12.
*/
if (!lastByte) {
remain -= 2;
accumdata += (block[byteoff++] & 0xff) << accumbits;
accumbits += 8;
accumdata += (block[byteoff++] & 0xff) << accumbits;
accumbits += 8;
} else {
remain--;
accumdata += (block[byteoff++] & 0xff) << accumbits;
accumbits += 8;
}
}
/* Compute the code */
code = accumdata & codeMask;
accumdata >>= codeSize;
accumbits -= codeSize;
/*
* Interpret the code
*/
if (code == clearCode) {
/* Clear code sets everything back to its initial value, then
* reads the immediately subsequent code as uncompressed data.
*/
/* Note that freeCode is one less than it is supposed to be,
* this is because it will be incremented next time round the
* loop
*/
freeCode = clearCode + 1;
codeSize = initCodeSize + 1;
maxCode = 1 << codeSize;
codeMask = maxCode - 1;
/* Continue if we've NOT reached the end, some Gif images
* contain bogus codes after the last clear code.
*/
if (y < height) {
continue;
}
/* pretend we've reached the end of the data */
code = eofCode;
}
if (code == eofCode) {
/* make sure we read the whole block of pixels. */
while (!blockEnd) {
if (readBytes(block, 0, blockLength + 1) != 0) {
/* quietly accept truncated GIF images */
return false;
}
blockLength = block[blockLength];
blockEnd = (blockLength == 0);
}
return true;
}
/* It must be data: save code in CurCode */
curCode = code;
/* Whenever it gets here outCount is always equal to
OUTCODELENGTH, so no need to reset outCount. */
// outCount = OUTCODELENGTH;
/* If greater or equal to freeCode, not in the hash table
* yet; repeat the last character decoded
*/
if (curCode >= freeCode) {
if (curCode > freeCode) {
/*
* if we get a code too far outside our range, it
* could case the parser to start traversing parts
* of our data structure that are out of range...
*/
/*In native version: goto flushit;*/
while (!blockEnd) {
if (readBytes(block, 0, blockLength + 1) != 0) {
/* quietly accept truncated GIF images */
return false;
}
blockLength = block[blockLength];
blockEnd = (blockLength == 0);
}
return true;
}
curCode = oldCode;
outCode[--outCount] = (byte) prevChar;
}
/* Unless this code is raw data, pursue the chain pointed
* to by curCode through the hash table to its end; each
* code in the chain puts its associated output code on
* the output queue.
*/
while (curCode > bitMask) {
outCode[--outCount] = suffix[curCode];
if (outCount == 0) {
/*
* In theory this should never happen since our
* prefix and suffix arrays are monotonically
* decreasing and so outCode will only be filled
* as much as those arrays, but I don't want to
* take that chance and the test is probably
* cheap compared to the read and write operations.
* If we ever do overflow the array, we will just
* flush the rest of the data and quietly accept
* the GIF as truncated here.
*/
// In native version: goto flushit;
while (!blockEnd) {
if (readBytes(block, 0, blockLength + 1) != 0) {
/* quietly accept truncated GIF images */
return false;
}
blockLength = block[blockLength];
blockEnd = (blockLength == 0);
}
return true;
}
curCode = prefix[curCode];
}
/* The last code in the chain is treated as raw data. */
prevChar = (char) curCode;
outCode[--outCount] = (byte) prevChar;
/* Now we put the data out to the Output routine. It's
* been stacked LIFO, so deal with it that way...
*/
len = OUTCODELENGTH - outCount; /* This is why I commented out
the code that resets outCount. */
while (--len >= 0) {
rasline[off++] = outCode[outCount++];
/* Update the X-coordinate, and if it overflows, update the
* Y-coordinate
*/
if (--x == 0) {
int count;
/* If a non-interlaced picture, just increment y to the next
* scan line. If it's interlaced, deal with the interlace as
* described in the GIF spec. Put the decoded scan line out
* to the screen if we haven't gone past the bottom of it
*/
// count = sendPixels(relx, rely+y, width, passht, rasline, model);
count = sendPixels(relx, rely + y, width, 1, rasline, model);
if (count <= 0) {
/* Nobody is listening any more. */
return false;
}
x = width;
off = 0;
/* pass inc ht ystart */
/* 0 8 8 0 */
/* 1 8 4 4 */
/* 2 4 2 2 */
/* 3 2 1 1 */
y += passinc;
while (y >= height) {
passinc = passht;
passht >>= 1;
y = passht;
if (passht == 0) {
// In native version: goto flushit;
while (!blockEnd) {
if (readBytes(block, 0, blockLength + 1) != 0) {
/* quietly accept truncated GIF images */
return false;
}
blockLength = block[blockLength] & 0xff;
blockEnd = (blockLength == 0);
}
return true;
}
}
}
}
/* Build the hash table on-the-fly. No table is stored in the file. */
prefix[freeCode] = (short) oldCode;
suffix[freeCode] = (byte) prevChar;
oldCode = code;
/* Point to the next slot in the table. If we exceed the
* maxCode, increment the code size unless
* it's already 12. If it is, do nothing: the next code
* decompressed better be CLEAR
*/
if (++freeCode >= maxCode) {
if (codeSize < 12) {
codeSize++;
maxCode <<= 1;
codeMask = maxCode - 1;
} else {
/* Just in case */
freeCode = maxCode - 1;
}
}
}
}
Color getColor(int index) {
IndexColorModel cm = (IndexColorModel) imp.getProcessor().getColorModel();
// IJ.write(""+index+" "+(new Color(cm.getRGB(index))));
return new Color(cm.getRGB(index));
}