void processTask(ETask task, ObjectMessage msg, EntityManager em) { EMethod method; EModel model; Collection<EBounds> bounds; TaskMessage tm; System.out.println("Processing task [id=" + String.valueOf(task.getId()) + "]..."); method = task.getMethod(); model = task.getModel(); bounds = getBoundsForModel(model, em); try { tm = (TaskMessage) msg.getObject(); if (method.getIdent().equals(EMethod.fba)) { FbaMethod.run(task, model, bounds); } else if (method.getIdent().equals(EMethod.fva)) { FvaMethod.run(task, model, bounds, (MultipleReactionsTaskMessage) tm); } else if (method.getIdent().equals(EMethod.rscan)) { RscanMethod.run(task, model, bounds, (MultipleReactionsTaskMessage) tm); } else if (method.getIdent().equals(EMethod.kgene)) { KgeneMethod.run(task, model, bounds); } msg.acknowledge(); } catch (AmkfbaException e) { AcornLogger.logError("AmkfbaException: " + e.getMessage()); markAsBroken(task, em); } catch (JMSException e) { e.printStackTrace(System.err); throw new Error("JMSException, aborting..."); } }
protected Object processRequest(Representation representation) { String sMethod = retrieveAttribute("method"); String sObject = ""; EMethod selectedMethod = EMethod.valueOf(sMethod); switch (selectedMethod) { case save: try { sObject = saveChannel(representation); } catch (Exception e) { } break; case delete: sObject = deleteChannel(representation); break; case list: sObject = getList(); break; case apps: sObject = getAvailableApps(representation); break; case apps_save: sObject = saveApps(representation); break; } return sObject; }