public String getTRValueSetCode(Concept concept) {
for (ConceptMap mapping : concept.getConceptMappings()) {
if (mapping.getConceptMapType().getUuid().equals(ConceptMapType.SAME_AS_MAP_TYPE_UUID)) {
return mapping.getConceptReferenceTerm().getCode();
}
}
for (ConceptName conceptName : concept.getShortNames()) {
return conceptName.getName();
}
return concept.getName().getName();
}
public CodeableConceptDt addTRCoding(Concept concept) {
CodeableConceptDt codeableConcept = new CodeableConceptDt();
Collection<ConceptMap> conceptMappings = concept.getConceptMappings();
for (ConceptMap mapping : conceptMappings) {
if (mapping.getConceptMapType().getUuid().equals(ConceptMapType.SAME_AS_MAP_TYPE_UUID)) {
addTRCodingsForReferenceTerms(concept, idMappingsRepository, codeableConcept, mapping);
}
}
addTRCodingForConcept(concept, idMappingsRepository, codeableConcept);
return codeableConcept;
}
private static ConceptMap getConceptMap(String sourceHl7Code, String code, String mapTypeUuid) {
ConceptMap conceptMap = new ConceptMap();
ConceptReferenceTerm conceptReferenceTerm = new ConceptReferenceTerm();
ConceptSource conceptSource = new ConceptSource();
conceptSource.setHl7Code(sourceHl7Code);
conceptReferenceTerm.setConceptSource(conceptSource);
conceptReferenceTerm.setCode(code);
conceptMap.setConceptReferenceTerm(conceptReferenceTerm);
ConceptMapType conceptMapType = new ConceptMapType();
if (mapTypeUuid != null) {
conceptMapType.setUuid(mapTypeUuid);
} else {
conceptMapType.setUuid(ConceptMapType.SAME_AS_MAP_TYPE_UUID);
}
conceptMap.setConceptMapType(conceptMapType);
return conceptMap;
}
private void addTRCodingsForReferenceTerms(
Concept concept,
IdMappingsRepository idMappingsRepository,
CodeableConceptDt codeableConcept,
ConceptMap mapping) {
ConceptReferenceTerm conceptReferenceTerm = mapping.getConceptReferenceTerm();
IdMapping idMapping = idMappingsRepository.findByInternalId(conceptReferenceTerm.getUuid());
if (idMapping != null) {
addFHIRCoding(
codeableConcept,
conceptReferenceTerm.getCode(),
idMapping.getUri(),
concept.getName().getName());
}
}
