public ChartWindow(String title) {
this.symbol = title;
thisp = this;
// initialize the main layout
setTitle(title);
mainpanel = new JPanel();
GridBagLayout gbl = new GridBagLayout();
GridBagConstraints gbc = new GridBagConstraints();
mainpanel.setLayout(gbl);
// build a toolbar
// add a plain status bar
this.statusLine = new JLabel("Done");
this.getContentPane().add(statusLine, BorderLayout.SOUTH);
statusLine.setBackground(new Color(0, 0, 0));
statusLine.setForeground(new Color(255, 255, 255));
statusLine.setOpaque(true);
//
x1 = new TimeSeries("symbol", FixedMillisecond.class);
dataset1.addSeries(x1);
System.out.println("Populated.");
//
chart = createChart(dataset1);
System.out.println("constr.");
// chart.getXYPlot().setOrientation(PlotOrientation.VERTICAL);
chart.setAntiAlias(false);
chartPanel = new ChartPanel(chart);
//
int i = 0;
gbc.anchor = gbc.NORTHWEST;
gbc.fill = gbc.BOTH;
gbc.weightx = 1;
gbc.gridx = 0;
gbc.weighty = 1;
gbc.gridy = i;
gbl.setConstraints(chartPanel, gbc);
mainpanel.add(chartPanel);
// System.out.println("add");
setVisible(true);
setSize(new Dimension(400, 300));
// chartPanel.setPopupMenu(buildPopupMenu());
chartPanel.setMouseZoomable(true);
chartPanel.setHorizontalAxisTrace(true);
chartPanel.setVerticalAxisTrace(true);
chartPanel.setHorizontalZoom(true);
chartPanel.setOpaque(true);
chartPanel.setBackground(new Color(0, 0, 0));
this.getContentPane().add(mainpanel, BorderLayout.CENTER);
this.setSize(600, 400);
this.toFront();
this.show();
}
/**
* Returns a sequence plot as a ChartPanel.
*
* @param aProteinSequencePanelParent the protein sequence panel parent
* @param sparklineDataset the dataset
* @param proteinAnnotations the protein annotations
* @param addReferenceLine if true, a reference line is added
* @param allowZooming if true, the user can zoom in the created plot/chart
* @return a sequence plot
*/
public ChartPanel getSequencePlot(
ProteinSequencePanelParent aProteinSequencePanelParent,
JSparklinesDataset sparklineDataset,
HashMap<Integer, ArrayList<ResidueAnnotation>> proteinAnnotations,
boolean addReferenceLine,
boolean allowZooming) {
this.proteinSequencePanelParent = aProteinSequencePanelParent;
DefaultCategoryDataset barChartDataset = new DefaultCategoryDataset();
StackedBarRenderer renderer = new StackedBarRenderer();
renderer.setShadowVisible(false);
CategoryToolTipGenerator myTooltips = new ProteinAnnotations(proteinAnnotations);
// add the data
for (int i = 0; i < sparklineDataset.getData().size(); i++) {
JSparklinesDataSeries sparklineDataSeries = sparklineDataset.getData().get(i);
for (int j = 0; j < sparklineDataSeries.getData().size(); j++) {
barChartDataset.addValue(sparklineDataSeries.getData().get(j), "" + i, "" + j);
renderer.setSeriesPaint(i, sparklineDataSeries.getSeriesColor());
renderer.setSeriesToolTipGenerator(i, myTooltips);
}
}
// create the chart
JFreeChart chart =
ChartFactory.createStackedBarChart(
null, null, null, barChartDataset, PlotOrientation.HORIZONTAL, false, false, false);
// fine tune the chart properites
CategoryPlot plot = chart.getCategoryPlot();
// remove space before/after the domain axis
plot.getDomainAxis().setUpperMargin(0);
plot.getDomainAxis().setLowerMargin(0);
// remove space before/after the range axis
plot.getRangeAxis().setUpperMargin(0);
plot.getRangeAxis().setLowerMargin(0);
renderer.setRenderAsPercentages(true);
renderer.setBaseToolTipGenerator(new IntervalCategoryToolTipGenerator());
// add the dataset to the plot
plot.setDataset(barChartDataset);
// hide unwanted chart details
plot.getRangeAxis().setVisible(false);
plot.getDomainAxis().setVisible(false);
plot.setRangeGridlinesVisible(false);
plot.setDomainGridlinesVisible(false);
// add a reference line in the middle of the dataset
if (addReferenceLine) {
DefaultCategoryDataset referenceLineDataset = new DefaultCategoryDataset();
referenceLineDataset.addValue(1.0, "A", "B");
plot.setDataset(1, referenceLineDataset);
LayeredBarRenderer referenceLineRenderer = new LayeredBarRenderer();
referenceLineRenderer.setSeriesBarWidth(0, referenceLineWidth);
referenceLineRenderer.setSeriesFillPaint(0, referenceLineColor);
referenceLineRenderer.setSeriesPaint(0, referenceLineColor);
plot.setRenderer(1, referenceLineRenderer);
}
// set up the chart renderer
plot.setRenderer(0, renderer);
// hide the outline
chart.getPlot().setOutlineVisible(false);
// make sure the background is the same as the panel
chart.getPlot().setBackgroundPaint(backgroundColor);
chart.setBackgroundPaint(backgroundColor);
final HashMap<Integer, ArrayList<ResidueAnnotation>> blockTooltips = proteinAnnotations;
// create the chart panel
ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.addChartMouseListener(
new ChartMouseListener() {
@Override
public void chartMouseClicked(ChartMouseEvent cme) {
if (cme.getEntity() != null && cme.getTrigger().getButton() == MouseEvent.BUTTON1) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null) {
proteinSequencePanelParent.annotationClicked(annotation, cme);
}
}
}
@Override
public void chartMouseMoved(ChartMouseEvent cme) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
if (cme.getEntity() != null && cme.getEntity() instanceof CategoryItemEntity) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null && !annotation.isEmpty()) {
if (blockTooltips.get(blockNumber).get(0).isClickable()) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.HAND_CURSOR));
}
}
}
}
});
if (!allowZooming) {
chartPanel.setPopupMenu(null);
chartPanel.setRangeZoomable(false);
}
chartPanel.setBackground(Color.WHITE);
return chartPanel;
}