private void addAnalyzerResultFromLine(List<AnalyzerResults> results, String line) {
String[] fields = StringUtil.separateCSVWithMixedEmbededQuotes(line);
// This insures that the row has not been truncated
if (fields.length < maxViewedIndex) {
return;
}
AnalyzerReaderUtil readerUtil = new AnalyzerReaderUtil();
String analyzerAccessionNumber = fields[Sample_ID].replace("\"", "");
analyzerAccessionNumber = StringUtil.strip(analyzerAccessionNumber, " ");
String date = fields[Date_Analyzed].replace("\"", "");
// this is sort of dumb, we have the indexes we are interested in
for (int i = 0; i < testNameIndex.length; i++) {
if (!GenericValidator.isBlankOrNull(testNameIndex[i])) {
MappedTestName mappedName =
AnalyzerTestNameCache.instance()
.getMappedTest(AnalyzerType.FACSCANTO, testNameIndex[i].replace("\"", ""));
if (mappedName == null) {
mappedName =
AnalyzerTestNameCache.instance()
.getEmptyMappedTestName(
AnalyzerType.FACSCANTO, testNameIndex[i].replace("\"", ""));
}
AnalyzerResults analyzerResults = new AnalyzerResults();
analyzerResults.setAnalyzerId(mappedName.getAnalyzerId());
String result = fields[i].replace("\"", "");
result = roundTwoDigits(result);
analyzerResults.setResult(result);
analyzerResults.setUnits(unitsIndex[i]);
analyzerResults.setCompleteDate(
DateUtil.convertStringDateToTimestampWithPatternNoLocale(date, DATE_PATTERN));
// analyzerResults.setCompleteTime(DateUtil.convertStringDateToTimestamp(date));
analyzerResults.setTestId(mappedName.getTestId());
analyzerResults.setAccessionNumber(analyzerAccessionNumber);
analyzerResults.setTestName(mappedName.getOpenElisTestName());
if (analyzerAccessionNumber != null) {
analyzerResults.setIsControl(
analyzerAccessionNumber.startsWith(CONTROL_ACCESSION_PREFIX));
} else {
analyzerResults.setIsControl(false);
}
results.add(analyzerResults);
AnalyzerResults resultFromDB = readerUtil.createAnalyzerResultFromDB(analyzerResults);
if (resultFromDB != null) {
results.add(resultFromDB);
}
}
}
}
private ReportExternalImport createReportExternalImport(
String sendingSiteId, String eventDate, String data) {
ReportExternalImport importReport = new ReportExternalImport();
importReport.setEventDate(
DateUtil.convertStringDateToTimestampWithPatternNoLocale(eventDate, DATE_PATTERN));
importReport.setSendingSite(sendingSiteId);
importReport.setReportType("testIndicators");
ReportExternalImport rei = reportImportDAO.getReportByEventDateSiteType(importReport);
if (rei != null) {
importReport = rei;
}
importReport.setData(data);
importReport.setSysUserId("1");
importReport.setRecievedDate(DateUtil.getTimestampAtMidnightForDaysAgo(0));
return importReport;
}
