// public Stage getStage() {
// return newStage;
// }
@FXML
@SuppressWarnings("unused")
private void handleOpen() {
FileChooser fileChooser = new FileChooser();
if (mainApp.getLastFilePath() != null && mainApp.getLastFilePath().exists()) {
fileChooser.setInitialDirectory(mainApp.getLastFilePath());
} else {
fileChooser.setInitialDirectory(new File(System.getProperty("user.home")));
}
// Set extension filter
ExtensionFilter extFilter = new ExtensionFilter("mzQuantML file (*.mzq)", "*.mzq");
fileChooser.getExtensionFilters().add(extFilter);
// Set the title for file dialog
fileChooser.setTitle("Select an mzQuantML file");
// Show open file dialog
file = fileChooser.showOpenDialog(mainApp.getPrimaryStage());
if (file != null) {
mainApp.loadMzqFile(file);
mainApp.setLastFilePath(file);
}
}
@FXML
@SuppressWarnings("unused")
private void handlePCA() {
mainApp.showPCAPlot();
}
@FXML
@SuppressWarnings("unused")
private void handleHeatMapPdf() {
mainApp.showHeatMapPdfWindow();
}
@FXML
@SuppressWarnings("unused")
private void handleHeatMapinR() {
mainApp.showHeatMapinR();
}
@FXML
@SuppressWarnings("unused")
private void handleClose() {
mainApp.closeMzqInfo();
}
@FXML
@SuppressWarnings("unused")
private void handleInstallRequiredPackages() {
mainApp.installRequiredPackages();
}
@FXML
@SuppressWarnings("unused")
private void showAbout() {
mainApp.showAbout();
}
@FXML
@SuppressWarnings("unused")
private void handleCurve() throws JAXBException {
mainApp.showCurve();
}