@Transactional(
value = "jamiTransactionManager",
readOnly = true,
propagation = Propagation.REQUIRED)
public IntactSource reloadFullyInitialisedSource(IntactSource cv) {
if (cv == null) {
return null;
}
IntactSource reloaded = null;
if (areSourceCollectionsLazy(cv)
&& cv.getAc() != null
&& !getIntactDao().getEntityManager().contains(cv)) {
reloaded = loadSourceByAc(cv.getAc());
}
// we need first to merge with reloaded complex
if (reloaded != null) {
// detach reloaded now so not changes will be committed
getIntactDao().getEntityManager().detach(reloaded);
InstitutionCloner cloner = new InstitutionCloner();
cloner.copyInitialisedProperties(cv, reloaded);
cv = reloaded;
}
// initialise xrefs because are first tab visible
initialiseXrefs(cv.getDbXrefs());
// initialise annotations because needs caution
initialiseAnnotations(cv.getDbAnnotations());
// initialise aliases
initialiseAliases(cv.getSynonyms());
return cv;
}
@Transactional(
value = "jamiTransactionManager",
readOnly = true,
propagation = Propagation.REQUIRED)
public int countAliases(IntactSource cv) {
return getIntactDao().getSourceDao().countSynonymsForSource(cv.getAc());
}
@Transactional(
value = "jamiTransactionManager",
readOnly = true,
propagation = Propagation.REQUIRED)
public Collection<Annotation> initialiseSourceAnnotations(IntactSource releasable) {
// reload complex without flushing changes
IntactSource reloaded = releasable;
// merge current user because detached
if (releasable.getAc() != null && !getIntactDao().getEntityManager().contains(releasable)) {
reloaded = getIntactDao().getEntityManager().find(IntactSource.class, releasable.getAc());
if (reloaded == null) {
reloaded = releasable;
}
}
initialiseAnnotations(reloaded.getAnnotations());
return reloaded.getAnnotations();
}
@Transactional(
value = "jamiTransactionManager",
readOnly = true,
propagation = Propagation.REQUIRED)
public IntactSource loadSourceByAc(String ac) {
IntactSource cv = getIntactDao().getEntityManager().find(IntactSource.class, ac);
if (cv != null) {
// initialise xrefs because are first tab visible
initialiseXrefs(cv.getDbXrefs());
// initialise annotations because needs caution, url, etc
initialiseAnnotations(cv.getDbAnnotations());
// initialise aliases
initialiseAliases(cv.getSynonyms());
}
return cv;
}
@Transactional(
value = "jamiTransactionManager",
propagation = Propagation.REQUIRED,
readOnly = true)
public void loadInstitutions() {
if (log.isDebugEnabled()) log.debug("Loading Institutions");
synchronized (this) {
this.institutionSelectItems = null;
List<IntactSource> allInstitutions =
getIntactDao().getSourceDao().getAllSorted(0, Integer.MAX_VALUE, "shortName", true);
institutionSelectItems = new ArrayList<SelectItem>(allInstitutions.size());
for (IntactSource institution : allInstitutions) {
institutionSelectItems.add(
new SelectItem(institution, institution.getShortName(), institution.getFullName()));
}
isInitialised = true;
}
}
private boolean areSourceCollectionsLazy(IntactSource cv) {
return !cv.areAnnotationsInitialized()
|| !cv.areXrefsInitialized()
|| !cv.areSynonymsInitialized();
}