@Test
public void testUsers() {
try {
int expected = getDataSet().getTable("User").getRowCount();
int actual = getSecurityDAO().listAllUsers().size();
for (User u : getSecurityDAO().listAllUsers()) {
System.out.println(u.toString());
}
} catch (Exception e) {
e.printStackTrace();
}
}
public JSONObject downloadPlateInputForm(HttpSession session, JSONObject json) {
if (json.has("documentFormat")) {
String documentFormat = json.getString("documentFormat");
try {
File f =
misoFileManager.getNewFile(
Plate.class,
"forms",
"PlateInputForm-" + LimsUtils.getCurrentDateAsString() + "." + documentFormat);
FormUtils.createPlateInputSpreadsheet(f);
return JSONUtils.SimpleJSONResponse("" + f.getName().hashCode());
} catch (Exception e) {
e.printStackTrace();
return JSONUtils.SimpleJSONError("Failed to get plate input form: " + e.getMessage());
}
} else {
return JSONUtils.SimpleJSONError("Missing project ID or document format supplied.");
}
}
@Test
public void testPools() {
try {
int expected = getDataSet().getTable("Pool").getRowCount();
int actual = getPoolDAO().count();
TestCase.assertEquals("Wrong number of Pools", expected, actual);
System.out.println("Expected number of Pools: " + expected + ", actual: " + actual);
for (Pool d : random(getPoolDAO(), actual, 1)) {
TestCase.assertNotNull(d);
TestCase.assertNotNull(d.getId());
}
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}
@Test
public void testPlatforms() {
try {
// get row count of experiments in the dataset
int expected = getDataSet().getTable("Platform").getRowCount();
// get number of experiments from the DAO
int actual = getPlatformDAO().count();
// test data contains 2 experiments, check size of returned list
TestCase.assertEquals("Wrong number of Platform", expected, actual);
System.out.println("Expected number of Platform: " + expected + ", actual: " + actual);
for (Platform d : random(getPlatformDAO(), actual, 5)) {
TestCase.assertNotNull(d);
TestCase.assertNotNull(d.getPlatformId());
}
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}
@Test
public void testDilutions() {
try {
int ec = getDataSet().getTable("emPCRDilution").getRowCount();
int lc = getDataSet().getTable("LibraryDilution").getRowCount();
int expected = ec + lc;
int actualL = getEmPCRDilutionDAO().count();
int actualE = getLibraryDilutionDAO().count();
TestCase.assertEquals("Wrong number of dilutions", expected, (actualL + actualE));
System.out.println(
"Expected number of dilutions: " + expected + ", actual: " + (actualL + actualE));
// for (Dilution d : random(getDilutionDAO(), actual, 5)) {
// TestCase.assertNotNull(d);
// TestCase.assertNotNull(d.getDilutionId());
// }
((MockSQLSecurityDAO) getSecurityDAO()).clearCaches();
} catch (Exception e) {
e.printStackTrace();
TestCase.fail();
}
}