private void writeDataFinish() throws IOException { // finish global variables ArrayInt.D0 totalArray = new ArrayInt.D0(); totalArray.set(profileIndex); try { ncfile.write(numProfilesTotalName, totalArray); } catch (InvalidRangeException e) { e.printStackTrace(); throw new IllegalStateException(e); } // finish the station data int nstns = stnList.size(); ArrayInt.D1 firstProfileArray = new ArrayInt.D1(nstns); ArrayInt.D1 numProfileArray = new ArrayInt.D1(nstns); ArrayInt.D1 nextProfileArray = new ArrayInt.D1(nprofiles); for (int i = 0; i < stnList.size(); i++) { ucar.unidata.geoloc.Station stn = stnList.get(i); StationTracker tracker = stationMap.get(stn.getName()); numProfileArray.set(i, tracker.numChildren); int first = (tracker.link.size() > 0) ? tracker.link.get(0) : -1; firstProfileArray.set(i, first); if (tracker.link.size() > 0) { // construct forward link List<Integer> nextList = tracker.link; for (int j = 0; j < nextList.size() - 1; j++) { Integer curr = nextList.get(j); Integer next = nextList.get(j + 1); nextProfileArray.set(curr, next); } Integer curr = nextList.get(nextList.size() - 1); nextProfileArray.set(curr, -1); } } try { ncfile.write(firstProfileName, firstProfileArray); ncfile.write(numProfilesName, numProfileArray); ncfile.write(nextProfileName, nextProfileArray); } catch (InvalidRangeException e) { e.printStackTrace(); throw new IllegalStateException(e); } // finish the profile data ArrayInt.D1 nextObsArray = new ArrayInt.D1(recno); ArrayInt.D1 firstObsArray = new ArrayInt.D1(nprofiles); ArrayInt.D1 numObsArray = new ArrayInt.D1(nprofiles); for (int i = 0; i < stnList.size(); i++) { ucar.unidata.geoloc.Station stn = stnList.get(i); StationTracker stnTracker = stationMap.get(stn.getName()); Set<Date> dates = stnTracker.profileMap.keySet(); for (Date date : dates) { ProfileTracker proTracker = stnTracker.profileMap.get(date); int trackerIndex = proTracker.parent_index; numObsArray.set(trackerIndex, proTracker.numChildren); int first = (proTracker.link.size() > 0) ? proTracker.link.get(0) : -1; firstObsArray.set(trackerIndex, first); if (proTracker.link.size() > 0) { // construct forward link List<Integer> nextList = proTracker.link; for (int j = 0; j < nextList.size() - 1; j++) { Integer curr = nextList.get(j); Integer next = nextList.get(j + 1); nextObsArray.set(curr, next); } Integer curr = nextList.get(nextList.size() - 1); nextObsArray.set(curr, -1); } } } try { ncfile.write(firstObsName, firstObsArray); ncfile.write(numObsName, numObsArray); ncfile.write(nextObsName, nextObsArray); } catch (InvalidRangeException e) { e.printStackTrace(); throw new IllegalStateException(e); } // finish the obs data ncfile.updateAttribute( null, new Attribute("time_coverage_start", dateFormatter.toDateTimeStringISO(minDate))); ncfile.updateAttribute( null, new Attribute("time_coverage_end", dateFormatter.toDateTimeStringISO(maxDate))); }