private synchronized void display(ExtSed sed) {
manageAssociatedManagerWindows(sed);
try {
SpectrumContainer container =
(SpectrumContainer) sed.getAttachment(IrisDisplayManager.FIT_MODEL);
// There is no Sed attachment, so build a model manager and attach it.
if (container == null) {
if (buildAttachment(sed)) {
return;
}
}
// VAOPD-879: spectrum name must be identical with Sed name.
if (container != null) {
container.getSpectrum().setName(sed.getId());
}
// Now display the Sed.
idm.display(sed, sed.getId());
// and add its frame to the workspace.
JInternalFrame frame = idm.getInternalFrame();
// VAOPD-863
frame.setTitle(sed.getId());
if (container != null) {
JFrame modelManagerFrame = container.getModelManager().getFrame();
if (modelManagerFrame != null) {
modelManagerFrame.setTitle(sed.getId());
}
}
if (frame != currentFrame) {
lastLocation = null;
disposeCurrentFrame();
currentFrame = frame;
currentFrame.setDefaultCloseOperation(JInternalFrame.HIDE_ON_CLOSE);
if (lastLocation != null) {
currentFrame.setLocation(lastLocation);
}
frame.setTitle("Iris Visualizer");
ws.addFrame(frame);
}
} catch (Exception ex) {
LogEvent.getInstance().fire(this, new LogEntry("Error: " + ex.getMessage(), sed));
Logger.getLogger("IrisVisualizer").log(Level.SEVERE, null, ex);
}
}
public void init(IrisApplication app, IWorkspace workspace) {
visualizer = this;
sedManager = (SedlibSedManager) workspace.getSedManager();
SpvInitialization spvinit = new SpvInitialization(new String[] {}, null);
SpvProperties.SetProperty(Include.APP_NAME, Include.IRIS_APP_NAME);
SpvProperties.SetProperty(Include.APP_VERSION, Include.IRIS_VERSION);
spvinit.initialize(null, false);
FunctionFactorySherpaHelper.initialize();
this.app = app;
ws = workspace;
idm = new IrisDisplayManager(sedManager, ws, this);
idm.setDesktopMode(true);
idm.setConnection(app.getSAMPController());
File rootDir =
new File(
app.getConfigurationDir()
+ File.separator
+ "analysis"
+ File.separator
+ "custom_models");
try {
customManager = new CustomModelsManager(rootDir);
TreeRefresher treeRefresher = new TreeRefresher();
treeRefresher.execute(null);
FunctionFactorySherpaHelper.SetTreeRefresher(treeRefresher);
} catch (Exception ex) {
Logger.getLogger(IrisVisualizer.class.getName()).log(Level.SEVERE, null, ex);
int ans =
NarrowOptionPane.showConfirmDialog(
ws.getRootFrame(),
"Error initializing Custom Fit Component Manager: "
+ ex.getMessage()
+ "\nDo you want to reset custom models?",
"Iris Visualizer",
NarrowOptionPane.ERROR_MESSAGE);
if (ans == NarrowOptionPane.OK_OPTION) {
try {
if (rootDir.isDirectory()) {
deleteDirectory(rootDir);
} else {
rootDir.delete();
}
rootDir.mkdir();
customManager = new CustomModelsManager(rootDir);
} catch (IOException ex1) {
Logger.getLogger(IrisVisualizer.class.getName()).log(Level.SEVERE, null, ex1);
}
}
}
SedEvent.getInstance()
.add(
new SedListener() {
public void process(final ExtSed source, SedCommand payload) {
if (payload == SedCommand.SELECTED || payload == SedCommand.CHANGED) {
if (source.getNumberOfSegments() > 0) {
display(source);
}
} else if (payload == SedCommand.REMOVED) {
remove(source);
}
}
});
SegmentEvent.getInstance()
.add(
new SegmentListener() {
public void process(Segment source, final SegmentPayload payload) {
if (payload.getSedCommand() == SedCommand.REMOVED) {
return;
}
ExtSed sed = payload.getSed();
// If the sed structure was modified, invalidate
// any model associated with it.
invalidateModel(sed);
display(payload.getSed());
}
});
MultipleSegmentEvent.getInstance()
.add(
new MultipleSegmentListener() {
public void process(List<Segment> source, final SegmentPayload payload) {
ExtSed sed = payload.getSed();
// If the sed structure was modified, invalidate
// any model associated with it.
invalidateModel(sed);
display(payload.getSed());
}
});
}