public void testRDFReadAnnotation() throws Exception {
OPMRdf2Xml fromRdf = new OPMRdf2Xml();
System.out.println("testRDFReadAnnotation (AnnotationReadTest.java)");
graph2 = fromRdf.convert("target/annotation1-rdf.xml");
OPMSerialiser serial = OPMSerialiser.getThreadOPMSerialiser();
serial.serialiseOPMGraph(new File("target/annotation-example1-from-rdf.xml"), graph2, true);
System.out.println("testRDFReadAnnotation (AnnotationReadTest.java): asserting True");
assertTrue(true);
// dont call todot, since exands annotations
// OPMToDot toDot=new OPMToDot();
// toDot.convert(graph2,"target/annotation1-rdf.dot", "target/annotation1-rdf.pdf");
OPMDeserialiser deserial = OPMDeserialiser.getThreadOPMDeserialiser();
OPMGraph graph = deserial.deserialiseOPMGraph(new File("target/annotation-example1.xml"));
assertTrue(graph != null);
Normalise normaliser = new Normalise(oFactory);
normaliser.updateOriginalGraph(graph);
normaliser.updateFromRdfGraph(graph2);
normaliser.sortGraph(graph);
normaliser.sortGraph(graph2);
serial.serialiseOPMGraph(
new File("target/annotation-example1-from-rdf-updated.xml"), graph2, true);
serial.serialiseOPMGraph(new File("target/annotation-example1-updated.xml"), graph, true);
assertTrue("self graph differ", graph.equals(graph));
assertTrue("self graph2 differ", graph2.equals(graph2));
assertTrue(
"accounts differ",
graph.getAccounts().getAccount().equals(graph2.getAccounts().getAccount()));
assertTrue(
"account overalps differ",
graph.getAccounts().getOverlaps().equals(graph2.getAccounts().getOverlaps()));
assertTrue("accounts elements differ", graph.getAccounts().equals(graph2.getAccounts()));
assertTrue("processes elements differ", graph.getProcesses().equals(graph2.getProcesses()));
assertTrue("artifacts elements differ", graph.getArtifacts().equals(graph2.getArtifacts()));
assertTrue("edges elements differ", graph.getDependencies().equals(graph2.getDependencies()));
if (graph.getAgents() != null && graph2.getAgents() != null) {
assertTrue("agents elements differ", graph.getAgents().equals(graph2.getAgents()));
} else {
if (graph.getAgents() != null) {
assertTrue(
"agents elements differ, graph not null", graph.getAgents().getAgent().isEmpty());
graph.setAgents(null);
} else if (graph2.getAgents() != null) {
assertTrue(
"agents elements differ, graph not null", graph2.getAgents().getAgent().isEmpty());
graph2.setAgents(null);
}
}
assertTrue("graph differ", graph.equals(graph2));
}
public void setId(String value) {
super.setId(value);
qname = new QName(prefix, value);
manager.designate(qname, org.openprovenance.rdf.OPMGraph.class);
}