예제 #1
0
 @AfterClass
 public void close() throws IOException {
   bimfd.close();
   famfd.close();
   pedfd.close();
   mapfd.close();
   tpedfd.close();
 }
예제 #2
0
 @Test
 public void MAP_writer() throws Exception {
   File newMap = new File(testMap.getAbsolutePath().replace(testMap.getName(), "new.map"));
   MapFileWriter w = new MapFileWriter(newMap);
   try {
     w.writeAll(mapfd.getAllEntries());
     boolean filesAreEqual = DirectoryCompare.compareFileContent(testMap, newMap);
     assertTrue(filesAreEqual);
   } finally {
     w.close();
   }
 }
예제 #3
0
 @Test
 public void MAP_getEntries() throws Exception {
   assertEquals(1, mapfd.getEntries(0, 1).size());
   assertEquals(1, mapfd.getEntries(1, 2).size());
   assertEquals(2, mapfd.getEntries(0, 2).size());
   assertEquals(2, mapfd.getAllEntries().size());
   assertEquals("snp1", mapfd.getEntries(0, 1).get(0).getSNP());
   assertEquals(0.0, mapfd.getEntries(1, 2).get(0).getcM());
   assertEquals("1", mapfd.getEntries(1, 2).get(0).getChromosome());
   assertEquals(1, mapfd.getAllEntries().get(0).getBpPos());
   assertEquals(2, mapfd.getAllEntries().get(1).getBpPos());
   assertEquals("snp2", mapfd.getAllEntries().get(1).getSNP());
 }
예제 #4
0
 @Test
 public void MAP_construct() throws Exception {
   assertEquals(2, mapfd.getNrOfElements());
 }