private void updateMatrix() {
ComplexMatrix[] matrices = new ComplexMatrix[layers.length - 2];
for (int i = 0; i < matrices.length; i++) {
Layer[] subset = {layers[i], layers[i + 1], layers[i + 2]};
matrices[i] = VcselMath.calculateTransferMatrix(source, subset);
}
ComplexMatrix overallTransfer = matrices[0];
for (int i = 1; i < matrices.length; i++) {
overallTransfer = overallTransfer.times(matrices[i]);
}
this.transfer = overallTransfer;
}
// Follows Pedrotti Eq. 19-36
// Eq. 19-44 exclusively for phase difference across quarter thickness
public Complex getReflectionCoefficient() {
Complex gamma0 = Complex.valueOf(gammas[0], 0);
Complex gammaS = Complex.valueOf(gammas[gammas.length - 1], 0);
Complex m11 = transfer.get(0, 0);
Complex m12 = transfer.get(0, 1);
Complex m21 = transfer.get(1, 0);
Complex m22 = transfer.get(1, 1);
// Pedrotti, Eq. 19-36
// Complex r = (g0m11+g0gSm12-m21-gSm22)/(g0m11+g0gSm12+m21+gSm22)
Complex n1 = gamma0.times(m11);
Complex n2 = gamma0.times(gammaS).times(m12);
Complex n3 = m21;
Complex n4 = gammaS.times(m22);
Complex numerator = n1.plus(n2).minus(n3).minus(n4);
Complex denominator = n1.plus(n2).plus(n3).plus(n4);
Complex r = numerator.divide(denominator);
return r;
}
@Override
public IMatrix times(IMatrix m) {
if (m instanceof JsMatrix) {
if (m instanceof JsComplexMatrix || this instanceof JsComplexMatrix) {
return new JsComplexMatrix(ComplexMatrix.valueOf(matrix.times(((JsMatrix) m).matrix)));
} else {
return new JsRealMatrix(Float64Matrix.valueOf(matrix.times(((JsMatrix) m).matrix)));
}
}
return null;
}
protected static JsComplexMatrix makeComplex(JsRealMatrix matrix) {
Float64Matrix realMatrix = (Float64Matrix) matrix.matrix;
int m = realMatrix.getRow(0).getDimension();
int n = realMatrix.getColumn(0).getDimension();
Complex[][] values = new Complex[m][n];
for (int i = 0; i < m; i++) {
for (int j = 0; j < n; j++) {
values[i][j] = Complex.valueOf(realMatrix.get(i, j).doubleValue(), 0);
}
}
return new JsComplexMatrix(ComplexMatrix.valueOf(values));
}