@Override
public IContainer getContainer(String shortName) {
List<IContainer> list = listChildren();
IContainer result = null;
for (IContainer container : list) {
if (container.getShortName().equals(shortName)) {
result = container;
break;
}
}
return result;
}
@Override
public List<IContainer> findAllContainerByPath(String path) throws NoResultException {
List<IContainer> list = new ArrayList<IContainer>();
List<IContainer> tmp = null;
String tmpName;
// Store in a map all different containers from all m_groups
Map<String, ArrayList<IContainer>> items = new HashMap<String, ArrayList<IContainer>>();
for (IGroup group : mGroups) {
try {
tmp = group.findAllContainerByPath(path);
for (IContainer item : tmp) {
tmpName = item.getShortName();
if (items.containsKey(tmpName)) {
items.get(tmpName).add(item);
} else {
ArrayList<IContainer> tmpList = new ArrayList<IContainer>();
tmpList.add(item);
items.put(tmpName, tmpList);
}
}
} catch (NoResultException e) {
// Nothing to do
}
}
// Construct that were found
for (Entry<String, ArrayList<IContainer>> entry : items.entrySet()) {
tmp = entry.getValue();
// If a Group list then construct a new Group folder
if (tmp.get(0).getModelType() == ModelType.Group) {
list.add(new NxsGroup(tmp.toArray(new IGroup[tmp.size()]), this, mDataset));
}
// If a IDataItem list then construct a new compound NxsDataItem
else {
ArrayList<NexusDataItem> dataItems = new ArrayList<NexusDataItem>();
for (IContainer item : tmp) {
if (item.getModelType() == ModelType.DataItem) {
dataItems.add((NexusDataItem) item);
}
}
NexusDataItem[] array = new NexusDataItem[dataItems.size()];
dataItems.toArray(array);
list.add(new NxsDataItem(array, this, mDataset));
}
}
return list;
}
private List<IContainer> listChildrenMultiGroup() {
if (!mIsChildUpdate) {
List<IContainer> tmp = null;
mChildren = new ArrayList<IContainer>();
String tmpName;
// Store in a map all different containers from all m_groups
Map<String, ArrayList<IContainer>> items = new HashMap<String, ArrayList<IContainer>>();
for (IGroup group : mGroups) {
tmp = new ArrayList<IContainer>();
tmp.addAll(group.getDataItemList());
tmp.addAll(group.getGroupList());
for (IContainer item : tmp) {
tmpName = item.getShortName();
if (items.containsKey(tmpName)) {
items.get(tmpName).add(item);
} else {
ArrayList<IContainer> tmpList = new ArrayList<IContainer>();
tmpList.add(item);
items.put(tmpName, tmpList);
}
}
}
// Construct what were found
for (Entry<String, ArrayList<IContainer>> entry : items.entrySet()) {
tmp = entry.getValue();
// If a Group list then construct a new Group folder
if (tmp.get(0).getModelType() == ModelType.Group) {
mChildren.add(new NxsGroup(tmp.toArray(new IGroup[tmp.size()]), this, mDataset));
}
// If a IDataItem list then construct a new compound NxsDataItem
else {
ArrayList<NexusDataItem> nxsDataItems = new ArrayList<NexusDataItem>();
for (IContainer item : tmp) {
if (item.getModelType() == ModelType.DataItem) {
nxsDataItems.add((NexusDataItem) item);
}
}
NexusDataItem[] array = new NexusDataItem[nxsDataItems.size()];
nxsDataItems.toArray(array);
mChildren.add(new NxsDataItem(array, this, mDataset));
}
}
mIsChildUpdate = true;
}
return mChildren;
}
