@Override
public CyNetworkView buildCyNetworkView(final CyNetwork network) {
final CyNetworkView view = networkViewFactory.createNetworkView(network);
final CyLayoutAlgorithm layout = layouts.getDefaultLayout();
TaskIterator itr =
layout.createTaskIterator(
view, layout.getDefaultLayoutContext(), CyLayoutAlgorithm.ALL_NODE_VIEWS, "");
Task nextTask = itr.next();
try {
nextTask.run(parentTaskMonitor);
} catch (Exception e) {
throw new RuntimeException("Could not finish layout", e);
}
parentTaskMonitor.setProgress(1.0d);
return view;
}
private final Map<String, String> writeNetworkFile(String file, CyNetworkView view) {
File networkFile = null;
try {
networkFile = new File(file);
TaskIterator itr = exportNetworkViewTaskFactory.createTaskIterator(view, networkFile);
while (itr.hasNext()) {
final Task task = itr.next();
task.run(new HeadlessTaskMonitor());
}
} catch (Exception e) {
e.printStackTrace();
throw getError("Could not save network file.", e, Response.Status.INTERNAL_SERVER_ERROR);
}
final Map<String, String> message = new HashMap<>();
message.put("file", networkFile.getAbsolutePath());
return message;
}
@Test
public void testRun() throws Exception {
final CyTable edgeTable = mock(CyTable.class);
when(net.getDefaultEdgeTable()).thenReturn(edgeTable);
UndoSupport undoSupport = mock(UndoSupport.class);
Set<CyRow> deselectedEdges = new HashSet<CyRow>();
deselectedEdges.add(r1);
deselectedEdges.add(r2);
when(edgeTable.getMatchingRows(CyNetwork.SELECTED, false)).thenReturn(deselectedEdges);
when(r1.get(CyNetwork.SUID, Long.class)).thenReturn(1L);
when(net.getEdge(1L)).thenReturn(e1);
when(r2.get(CyNetwork.SUID, Long.class)).thenReturn(2L);
when(net.getEdge(2L)).thenReturn(e2);
// run the task
Task t = new SelectAllEdgesTask(undoSupport, net, networkViewManager, eventHelper);
t.run(tm);
// check that the expected rows were set
verify(r1, times(1)).set("selected", true);
verify(r2, times(1)).set("selected", true);
}