private Set<View<CyNode>> getLayoutNodes(CyLayoutAlgorithm layout, CyNetworkView networkView) {
if (layout.getSupportsSelectedOnly() && selectedTunable.selectedNodesOnly) {
Set<View<CyNode>> nodeViews = new HashSet<View<CyNode>>();
CyNetwork network = networkView.getModel();
for (View<CyNode> view : networkView.getNodeViews()) {
if (network.getRow(view.getModel()).get(CyNetwork.SELECTED, Boolean.class)
&& view.getVisualProperty(BasicVisualLexicon.NODE_VISIBLE)) {
nodeViews.add(view);
}
}
return nodeViews;
}
return CyLayoutAlgorithm.ALL_NODE_VIEWS;
}
/**
* Apply bypass
*
* @param netView
* @param graphObjectView
* @param vp
*/
private final void applBypassValue(
final CyNetworkView netView,
final View<? extends CyIdentifiable> graphObjectView,
VisualProperty<?> vp) {
final ValueEditor<Object> editor =
(ValueEditor<Object>) editorManager.getValueEditor(vp.getRange().getType());
final Object bypassValue = editor.showEditor(null, graphObjectView.getVisualProperty(vp));
// Set lock for the vp
graphObjectView.setLockedValue(vp, bypassValue);
// Apply the new value only for the given view
// TODO don't do this, because it overwrites some bypassed values with default ones!!! Calling
// setLockedValue should be enough
// final CyRow row = netView.getModel().getRow(graphObjectView.getModel());
// vmm.getCurrentVisualStyle().apply(row, graphObjectView);
// Redraw the view
netView.updateView();
}
NodeLocations(final View<CyNode> nodeView) {
xLocation = nodeView.getVisualProperty(NODE_X_LOCATION);
yLocation = nodeView.getVisualProperty(NODE_Y_LOCATION);
zLocation = nodeView.getVisualProperty(NODE_Z_LOCATION);
}
private void checkView(final CyNetworkView view) {
assertEquals(Color.BLACK, view.getVisualProperty(NETWORK_BACKGROUND_PAINT));
assertEquals(new Double(639.0d), view.getVisualProperty(NETWORK_WIDTH));
assertEquals(new Double(624.0d), view.getVisualProperty(NETWORK_HEIGHT));
assertEquals(
new Double(3091.2991395970175d), view.getVisualProperty(NETWORK_CENTER_X_LOCATION));
assertEquals(new Double(3610.396738076269d), view.getVisualProperty(NETWORK_CENTER_Y_LOCATION));
assertEquals(new Double(0.05044042295795177d), view.getVisualProperty(NETWORK_SCALE_FACTOR));
// All nodes have the same size, border and shape
final View<CyNode> nv = view.getNodeView(view.getModel().getNodeList().iterator().next());
assertEquals(80, nv.getVisualProperty(NODE_WIDTH).intValue());
assertEquals(30, nv.getVisualProperty(NODE_HEIGHT).intValue());
assertEquals(NodeShapeVisualProperty.ROUND_RECTANGLE, nv.getVisualProperty(NODE_SHAPE));
assertEquals(180, nv.getVisualProperty(NODE_TRANSPARENCY).intValue());
assertEquals(2, nv.getVisualProperty(NODE_BORDER_WIDTH).intValue());
assertEquals(LineTypeVisualProperty.SOLID, nv.getVisualProperty(NODE_BORDER_LINE_TYPE));
assertEquals(new Color(153, 153, 255), nv.getVisualProperty(NODE_BORDER_PAINT));
assertEquals(255, nv.getVisualProperty(NODE_BORDER_TRANSPARENCY).intValue());
assertEquals(new Color(255, 255, 255), nv.getVisualProperty(NODE_LABEL_COLOR));
assertEquals(255, nv.getVisualProperty(NODE_LABEL_TRANSPARENCY).intValue());
// All edges have the same width and other properties
final View<CyEdge> ev = view.getEdgeView(view.getModel().getEdgeList().iterator().next());
assertEquals(new Double(1.0), ev.getVisualProperty(EDGE_WIDTH));
assertEquals(255, ev.getVisualProperty(EDGE_TRANSPARENCY).intValue());
assertEquals(ArrowShapeVisualProperty.NONE, ev.getVisualProperty(EDGE_SOURCE_ARROW_SHAPE));
assertEquals(ArrowShapeVisualProperty.NONE, ev.getVisualProperty(EDGE_TARGET_ARROW_SHAPE));
}