예제 #1
0
    @Override
    public void valueChanged(ListSelectionEvent e) {

      if (!e.getValueIsAdjusting()) {
        int rowNum = table.getSelectedRow();
        if (rowNum >= 0) {
          // get table model
          PeptideSpeciesPSMTableModel pepTableModel =
              (PeptideSpeciesPSMTableModel) table.getModel();

          // get spectrum reference column
          int identColNum =
              pepTableModel.getColumnIndex(PeptideTableHeader.IDENTIFICATION_ID.getHeader());
          int peptideColNum =
              pepTableModel.getColumnIndex(PeptideTableHeader.PEPTIDE_ID.getHeader());

          // get spectrum id
          int modelRowIndex = table.convertRowIndexToModel(rowNum);
          Comparable identId = (Comparable) pepTableModel.getValueAt(modelRowIndex, identColNum);
          Comparable peptideId =
              (Comparable) pepTableModel.getValueAt(modelRowIndex, peptideColNum);

          logger.debug(
              "Peptide table selection:  Protein id: " + identId + " Peptide Id: " + peptideId);

          // fire a background task to retrieve peptide
          if (peptideId != null && identId != null) {
            // publish the event to local event bus
            EventService eventBus =
                ContainerEventServiceFinder.getEventService(PeptidePSMPane.this);
            eventBus.publish(new PSMEvent(PeptidePSMPane.this, controller, identId, peptideId));
          }
        }
      }
    }
예제 #2
0
  @Override
  public void subscribeToEventBus(EventService eventBus) {
    if (eventBus == null) {
      eventBus = ContainerEventServiceFinder.getEventService(this);
    }
    peptideSpeciesEventSubscriber = new PeptideSpeciesEventSubscriber(psmTable);
    eventBus.subscribe(PeptideSpeciesEvent.class, peptideSpeciesEventSubscriber);

    changeRankingThresholdEventSubscriber = new ChangeRankingThresholdEventSubscriber(psmTable);
    eventBus.subscribe(ChangeRankingThresholdEvent.class, changeRankingThresholdEventSubscriber);
  }