@Override
public void valueChanged(ListSelectionEvent e) {
if (!e.getValueIsAdjusting()) {
int rowNum = table.getSelectedRow();
if (rowNum >= 0) {
// get table model
PeptideSpeciesPSMTableModel pepTableModel =
(PeptideSpeciesPSMTableModel) table.getModel();
// get spectrum reference column
int identColNum =
pepTableModel.getColumnIndex(PeptideTableHeader.IDENTIFICATION_ID.getHeader());
int peptideColNum =
pepTableModel.getColumnIndex(PeptideTableHeader.PEPTIDE_ID.getHeader());
// get spectrum id
int modelRowIndex = table.convertRowIndexToModel(rowNum);
Comparable identId = (Comparable) pepTableModel.getValueAt(modelRowIndex, identColNum);
Comparable peptideId =
(Comparable) pepTableModel.getValueAt(modelRowIndex, peptideColNum);
logger.debug(
"Peptide table selection: Protein id: " + identId + " Peptide Id: " + peptideId);
// fire a background task to retrieve peptide
if (peptideId != null && identId != null) {
// publish the event to local event bus
EventService eventBus =
ContainerEventServiceFinder.getEventService(PeptidePSMPane.this);
eventBus.publish(new PSMEvent(PeptidePSMPane.this, controller, identId, peptideId));
}
}
}
}
@Override
public void subscribeToEventBus(EventService eventBus) {
if (eventBus == null) {
eventBus = ContainerEventServiceFinder.getEventService(this);
}
peptideSpeciesEventSubscriber = new PeptideSpeciesEventSubscriber(psmTable);
eventBus.subscribe(PeptideSpeciesEvent.class, peptideSpeciesEventSubscriber);
changeRankingThresholdEventSubscriber = new ChangeRankingThresholdEventSubscriber(psmTable);
eventBus.subscribe(ChangeRankingThresholdEvent.class, changeRankingThresholdEventSubscriber);
}