private void writeSampleLikelihoods(
StringBuffer out, VariantContext vc, double[] log10Likelihoods) {
if (VQSRCalibrator != null) {
log10Likelihoods =
VQSRCalibrator.includeErrorRateInLikelihoods(VQSLOD_KEY, vc, log10Likelihoods);
}
double[] normalizedLikelihoods = MathUtils.normalizeFromLog10(log10Likelihoods);
// see if we need to randomly mask out genotype in this position.
for (double likeVal : normalizedLikelihoods) {
out.append(formatter.format(likeVal));
// out.append(String.format("%5.4f ",likeVal));
}
}
