/**
* Note: if you change this unit test, also change the cook book:
* http://www.biojava.org/wiki/BioJava:CookBook3:SupportedProtMod
*/
public void testGetBy() {
ProteinModification mod;
Set<ProteinModification> mods;
mod = ProteinModificationRegistry.getById("0001");
assertNotNull(mod);
// a set of protein modifications by RESID ID
mods = ProteinModificationRegistry.getByResidId("AA0151");
assertNotNull(mods);
// a set of protein modifications by PSI-MOD ID
mods = ProteinModificationRegistry.getByPsimodId("MOD:00305");
assertNotNull(mods);
// a set of protein modifications by PDBCC ID
mods = ProteinModificationRegistry.getByPdbccId("SEP");
assertNotNull(mods);
// a set of protein modifications by category
mods = ProteinModificationRegistry.getByCategory(ModificationCategory.ATTACHMENT);
assertNotNull(mods);
// a set of protein modifications by occurrence type
mods = ProteinModificationRegistry.getByOccurrenceType(ModificationOccurrenceType.NATURAL);
assertNotNull(mods);
// a set of protein modifications by a keyword
mods = ProteinModificationRegistry.getByKeyword("phosphoprotein");
assertNotNull(mods);
// a set of protein modifications by involved components.
mods = ProteinModificationRegistry.getByComponent(Component.of("FAD"));
assertNotNull(mods);
}
