/**
* Check whether the contents of src and dst are the same.
*
* <p>Return false if dstpath does not exist
*
* <p>If the files have different sizes, return false.
*
* <p>If the files have the same sizes, the file checksums will be compared.
*
* <p>When file checksum is not supported in any of file systems, two files are considered as the
* same if they have the same size.
*/
private static boolean sameFile(
FileSystem srcfs, FileStatus srcstatus, FileSystem dstfs, Path dstpath) throws IOException {
FileStatus dststatus;
try {
dststatus = dstfs.getFileStatus(dstpath);
} catch (FileNotFoundException fnfe) {
return false;
}
// same length?
if (srcstatus.getLen() != dststatus.getLen()) {
return false;
}
// compare checksums
try {
final FileChecksum srccs = srcfs.getFileChecksum(srcstatus.getPath());
final FileChecksum dstcs = dstfs.getFileChecksum(dststatus.getPath());
// return true if checksum is not supported
// (i.e. some of the checksums is null)
return srccs == null || dstcs == null || srccs.equals(dstcs);
} catch (FileNotFoundException fnfe) {
return false;
}
}
/**
* Check whether the contents of src and dst are the same.
*
* <p>Return false if dstpath does not exist
*
* <p>If the files have different sizes, return false.
*
* <p>If the files have the same sizes, the file checksums will be compared.
*
* <p>When file checksum is not supported in any of file systems, two files are considered as the
* same if they have the same size.
*/
private static boolean sameFile(
FileSystem srcfs, FileStatus srcstatus, FileSystem dstfs, Path dstpath) throws IOException {
FileStatus dststatus;
try {
dststatus = dstfs.getFileStatus(dstpath);
} catch (FileNotFoundException fnfe) {
return false;
}
// same length?
if (srcstatus.getLen() != dststatus.getLen()) {
return false;
}
// get src checksum
final FileChecksum srccs;
try {
srccs = srcfs.getFileChecksum(srcstatus.getPath());
} catch (FileNotFoundException fnfe) {
/*
* Two possible cases:
* (1) src existed once but was deleted between the time period that
* srcstatus was obtained and the try block above.
* (2) srcfs does not support file checksum and (incorrectly) throws
* FNFE, e.g. some previous versions of HftpFileSystem.
* For case (1), it is okay to return true since src was already deleted.
* For case (2), true should be returned.
*/
return true;
}
// compare checksums
try {
final FileChecksum dstcs = dstfs.getFileChecksum(dststatus.getPath());
// return true if checksum is not supported
// (i.e. some of the checksums is null)
return srccs == null || dstcs == null || srccs.equals(dstcs);
} catch (FileNotFoundException fnfe) {
return false;
}
}
/** * Compare the checksums of the hdfs file as well as the local copied file. * * @author [email protected] * @date Fri Jan 27 06:06:00 2012 */ boolean compareChecksums(FileSystem fs, Path p, String sFsPath) { try { // get hdfs file info FileStatus stat = fs.getFileStatus(p); // get HDFS checksum FileChecksum ck = fs.getFileChecksum(p); String sCk, sCkShort; if (ck == null) { sCk = sCkShort = "<null>"; } else { sCk = ck.toString(); sCkShort = sCk.replaceAll("^.*:", ""); } // System.out.println(p.toUri().getPath() + " len=" + stat.getLen() // + " " + stat.getOwner() + "/" + stat.getGroup() // + " checksum=" + sCk); // find the local file File fLocal = new File(sFsPath); if (!fLocal.exists()) { System.out.println("CHECKSUM-ERROR: file does not exist: " + sFsPath); return false; } if (!fLocal.isFile()) { System.out.println("CHECKSUM-ERROR: path is not a file: " + sFsPath); return false; } if (stat.getLen() != fLocal.length()) { System.out.println( "CHECKSUM-ERROR: length mismatch: " + sFsPath + " hdfslen=" + stat.getLen() + " fslen=" + fLocal.length()); return false; } // get local fs checksum FileChecksum ckLocal = getLocalFileChecksum(sFsPath); if (ckLocal == null) { System.out.println("ERROR Failed to get checksum for local file " + sFsPath); return false; } // compare checksums as a string, after stripping the // algorithm name from the beginning String sCkLocal = ckLocal.toString(); String sCkLocalShort = sCkLocal.replaceAll("^.*:", ""); if (false == sCkShort.equals(sCkLocalShort)) { System.out.println( "CHECKSUM-ERROR: checksum mismatch: " + sFsPath + "\nhdfs = " + sCk + "\nlocal= " + sCkLocal); return false; } return true; } catch (IOException e) { System.out.println("CHECKSUM-ERROR: " + sFsPath + " exception " + e.toString()); } return false; }
public int run(String[] args) throws Exception {
// printUsage();
/*
* SETUP
*/
Configuration argConf = getConf();
Hashtable<String, String> confArg = new Hashtable<String, String>();
setup(confArg, argConf);
Date currentTime = new Date();
Date endDate = new Date(new Long(confArg.get("timestamp_stop")));
Boolean full_run = confArg.get("intermediate").matches("(?i).*true.*");
Boolean quick_add = confArg.get("quick_add").matches("(?i).*true.*");
logger.info("Running GeStore");
// ZooKeeper setup
Configuration config = HBaseConfiguration.create();
zkWatcher = new ZooKeeperWatcher(config, "Testing", new HBaseAdmin(config));
zkInstance =
new ZooKeeper(
ZKConfig.getZKQuorumServersString(config),
config.getInt("zookeeper.session.timeout", -1),
zkWatcher);
if (!confArg.get("task_id").isEmpty()) {
confArg.put("temp_path", confArg.get("temp_path") + confArg.get("task_id"));
}
String lockRequest = confArg.get("file_id");
if (!confArg.get("run_id").isEmpty())
lockRequest = lockRequest + "_" + confArg.get("run_id") + "_";
if (!confArg.get("task_id").isEmpty())
lockRequest = lockRequest + "_" + confArg.get("task_id") + "_";
// Get type of movement
toFrom type_move = checkArgs(confArg);
if (type_move == toFrom.LOCAL2REMOTE && !confArg.get("format").equals("unknown")) {
List<String> arguments = new ArrayList<String>();
arguments.add("-Dinput=" + confArg.get("local_path"));
arguments.add("-Dtable=" + confArg.get("file_id"));
arguments.add("-Dtimestamp=" + confArg.get("timestamp_stop"));
arguments.add("-Dtype=" + confArg.get("format"));
arguments.add("-Dtarget_dir=" + confArg.get("base_path") + "_" + confArg.get("file_id"));
arguments.add("-Dtemp_hdfs_path=" + confArg.get("temp_path"));
arguments.add("-Drun_id=" + confArg.get("run_id"));
if (!confArg.get("run_id").isEmpty()) arguments.add("-Drun_id=" + confArg.get("run_id"));
if (!confArg.get("task_id").isEmpty()) arguments.add("-Dtask_id=" + confArg.get("task_id"));
if (quick_add) arguments.add("-Dquick_add=" + confArg.get("quick_add"));
String lockName = lock(lockRequest);
String[] argumentString = arguments.toArray(new String[arguments.size()]);
adddb.main(argumentString);
unlock(lockName);
System.exit(0);
}
// Database registration
dbutil db_util = new dbutil(config);
db_util.register_database(confArg.get("db_name_files"), true);
db_util.register_database(confArg.get("db_name_runs"), true);
db_util.register_database(confArg.get("db_name_updates"), true);
FileSystem hdfs = FileSystem.get(config);
FileSystem localFS = FileSystem.getLocal(config);
// Get source type
confArg.put("source", getSource(db_util, confArg.get("db_name_files"), confArg.get("file_id")));
confArg.put(
"database", isDatabase(db_util, confArg.get("db_name_files"), confArg.get("file_id")));
if (!confArg.get("source").equals("local")
&& type_move == toFrom.REMOTE2LOCAL
&& !confArg.get("timestamp_stop").equals(Integer.toString(Integer.MAX_VALUE))) {
confArg.put("timestamp_stop", Long.toString(latestVersion(confArg, db_util)));
}
/*
* Get previous timestamp
*/
Get run_id_get = new Get(confArg.get("run_id").getBytes());
Result run_get = db_util.doGet(confArg.get("db_name_runs"), run_id_get);
KeyValue run_file_prev =
run_get.getColumnLatest(
"d".getBytes(), (confArg.get("file_id") + "_db_timestamp").getBytes());
String last_timestamp = new String("0");
if (null != run_file_prev && !confArg.get("source").equals("local")) {
long last_timestamp_real = run_file_prev.getTimestamp();
Long current_timestamp = new Long(confArg.get("timestamp_real"));
if ((current_timestamp - last_timestamp_real) > 36000) {
last_timestamp = new String(run_file_prev.getValue());
Integer lastTimestamp = new Integer(last_timestamp);
lastTimestamp += 1;
last_timestamp = lastTimestamp.toString();
logger.info("Last timestamp: " + last_timestamp + " End data: " + endDate);
Date last_run = new Date(run_file_prev.getTimestamp());
if (last_run.before(endDate) && !full_run) {
confArg.put("timestamp_start", last_timestamp);
}
}
}
Integer tse = new Integer(confArg.get("timestamp_stop"));
Integer tss = new Integer(confArg.get("timestamp_start"));
if (tss > tse) {
logger.info("No new version of requested file.");
return 0;
}
/*
* Generate file
*/
String lockName = lock(lockRequest);
Get file_id_get = new Get(confArg.get("file_id").getBytes());
Result file_get = db_util.doGet(confArg.get("db_name_files"), file_id_get);
if (!file_get.isEmpty()) {
boolean found =
hasFile(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
getFullPath(confArg));
if (confArg.get("source").equals("fullfile")) {
found = false;
}
String filenames_put =
getFileNames(
db_util, confArg.get("db_name_files"), confArg.get("file_id"), getFullPath(confArg));
// Filename not found in file database
if (!found && type_move == toFrom.REMOTE2LOCAL) {
if (!confArg.get("source").equals("local")) {
// Generate intermediate file
if (getFile(hdfs, confArg, db_util) == null) {
unlock(lockName);
return 1;
}
// Put generated file into file database
if (!confArg.get("format").equals("fullfile")) {
putFileEntry(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
confArg.get("full_file_name"),
confArg.get("source"));
}
} else {
logger.warn("Remote file not found, and cannot be generated! File: " + confArg);
unlock(lockName);
return 1;
}
}
} else {
if (type_move == toFrom.REMOTE2LOCAL) {
logger.warn("Remote file not found, and cannot be generated.");
unlock(lockName);
return 1;
}
}
/*
* Copy file
* Update tables
*/
if (type_move == toFrom.LOCAL2REMOTE) {
if (!confArg.get("format").equals("fullfile")) {
putFileEntry(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
getFullPath(confArg),
confArg.get("source"));
}
putRunEntry(
db_util,
confArg.get("db_name_runs"),
confArg.get("run_id"),
confArg.get("file_id"),
confArg.get("type"),
confArg.get("timestamp_real"),
confArg.get("timestamp_stop"),
getFullPath(confArg),
confArg.get("delimiter"));
hdfs.copyFromLocalFile(new Path(confArg.get("local_path")), new Path(getFullPath(confArg)));
} else if (type_move == toFrom.REMOTE2LOCAL) {
FileStatus[] files = hdfs.globStatus(new Path(getFullPath(confArg) + "*"));
putRunEntry(
db_util,
confArg.get("db_name_runs"),
confArg.get("run_id"),
confArg.get("file_id"),
confArg.get("type"),
confArg.get("timestamp_real"),
confArg.get("timestamp_stop"),
getFullPath(confArg),
confArg.get("delimiter"));
unlock(lockName);
for (FileStatus file : files) {
Path cur_file = file.getPath();
Path cur_local_path =
new Path(new String(confArg.get("local_path") + confArg.get("file_id")));
String suffix = getSuffix(getFileName(confArg), cur_file.getName());
if (suffix.length() > 0) {
cur_local_path = cur_local_path.suffix(new String("." + suffix));
}
if (confArg.get("copy").equals("true")) {
String crc = hdfs.getFileChecksum(cur_file).toString();
if (checksumLocalTest(cur_local_path, crc)) {
continue;
} else {
hdfs.copyToLocalFile(cur_file, cur_local_path);
writeChecksum(cur_local_path, crc);
}
} else {
System.out.println(cur_local_path + "\t" + cur_file);
}
}
}
unlock(lockName);
return 0;
}
