public StudySubjectBean getSSBean(HashMap<String, String> userContext) throws Exception {
String studySubjectOid = userContext.get("studySubjectOID");
StudySubjectBean ssBean = null;
StudySubjectDAO ssdao = new StudySubjectDAO(dataSource);
SubjectDAO subjectdao = new SubjectDAO(dataSource);
UserAccountDAO udao = new UserAccountDAO(dataSource);
if (studySubjectOid != null) {
ssBean = ssdao.findByOid(studySubjectOid);
} else {
String studyOid = userContext.get("studyOID");
StudyBean studyBean = sdao.findByOid(studyOid);
int studyEventDefnId = Integer.valueOf(userContext.get("studyEventDefinitionID"));
int studyEventOrdinal = Integer.valueOf(userContext.get("studyEventOrdinal"));
UserAccountBean uBean = (UserAccountBean) udao.findByPK(1);
// build Subject Account
SubjectBean subjectBean = createSubjectBean(uBean);
subjectBean = (SubjectBean) subjectdao.findByPK(subjectBean.getId());
// build StudySubject Account
ssBean = createStudySubjectBean(studyBean, subjectBean, uBean);
ssBean = (StudySubjectBean) ssdao.findByPK(ssBean.getId());
System.out.println("study subject oid: " + ssBean.getOid());
// build User Account
UserAccountBean userAccountBean = createUserAccount(uBean, studyBean, ssBean);
userAccountBean = (UserAccountBean) udao.findByPK(userAccountBean.getId());
// build and schedule study Event
StudyEventBean studyEventBean =
createStudyEventBean(ssBean, studyEventDefnId, studyEventOrdinal, userAccountBean);
}
return ssBean;
}
public String getInputUsername(StudyBean studyBean, StudySubjectBean studySubjectBean) {
String inputUserName = null;
if (studySubjectBean != null) {
if (studyBean.getParentStudyId() > 0) studyBean = getStudy(studyBean.getParentStudyId());
inputUserName = studyBean.getOid() + "." + studySubjectBean.getOid();
}
return inputUserName;
}
/**
* @api {post} /pages/api/v1/editform/:studyOid/submission Submit form data
* @apiName doSubmission
* @apiPermission admin
* @apiVersion 1.0.0
* @apiParam {String} studyOid Study Oid.
* @apiParam {String} ecid Key that will be used to look up subject context information while
* processing submission.
* @apiGroup Form
* @apiDescription Submits the data from a completed form.
*/
@POST
@Path("/{studyOID}/submission")
@Produces(MediaType.APPLICATION_XML)
public Response doSubmission(
@Context HttpServletRequest request,
@Context HttpServletResponse response,
@Context ServletContext servletContext,
@PathParam("studyOID") String studyOID,
@QueryParam(FORM_CONTEXT) String context) {
String output = null;
Response.ResponseBuilder builder = Response.noContent();
String studySubjectOid = null;
Integer studyEventDefnId = null;
Integer studyEventOrdinal = null;
String crfVersionOID = null;
CRFVersionDAO crfvdao = new CRFVersionDAO(dataSource);
try {
if (ServletFileUpload.isMultipartContent(request)) {
LOGGER.warn("WARNING: This prototype doesn't support multipart content.");
}
if (!mayProceedSubmission(studyOID))
builder.status(javax.ws.rs.core.Response.Status.NOT_ACCEPTABLE).build();
PFormCache cache = PFormCache.getInstance(servletContext);
HashMap<String, String> userContext = cache.getSubjectContext(context);
StudySubjectDAO ssdao = new StudySubjectDAO<String, ArrayList>(dataSource);
StudySubjectBean ssBean = getSSBean(userContext);
if (!mayProceedSubmission(studyOID, ssBean)) return null;
studyEventDefnId = Integer.valueOf(userContext.get("studyEventDefinitionID"));
studyEventOrdinal = Integer.valueOf(userContext.get("studyEventOrdinal"));
crfVersionOID = userContext.get("crfVersionOID");
StringWriter writer = new StringWriter();
String body = IOUtils.toString(request.getInputStream(), "UTF-8");
CRFVersionBean crfVersion = crfvdao.findByOid(crfVersionOID);
if (crfVersion.getXform() != null && !crfVersion.getXform().equals("")) {
body = body.substring(body.indexOf("<" + crfVersion.getXformName()));
int length = body.indexOf(" ");
body =
body.replace(
body.substring(body.lastIndexOf("<meta>"), body.lastIndexOf("</meta>") + 7), "");
body = body.substring(0, body.lastIndexOf("</" + crfVersion.getXformName()) + length + 2);
body = "<instance>" + body + "</instance>";
} else {
body = body.substring(body.indexOf("<F_"));
int length = body.indexOf(" ");
body =
body.replace(body.substring(body.indexOf("<meta>"), body.indexOf("</meta>") + 7), "");
body = body.substring(0, body.indexOf("</F_") + length + 2);
body = "<instance>" + body + "</instance>";
}
Errors errors =
getPformSubmissionService()
.saveProcess(
body,
ssBean.getOid(),
studyEventDefnId,
studyEventOrdinal,
crfvdao.findByOid(crfVersionOID));
// Set response headers
Calendar cal = Calendar.getInstance(TimeZone.getTimeZone("GMT"));
Date currentDate = new Date();
cal.setTime(currentDate);
SimpleDateFormat format = new SimpleDateFormat("E, dd MMM yyyy HH:mm:ss zz");
format.setCalendar(cal);
builder.header("Date", format.format(currentDate));
builder.header("X-OpenRosa-Version", "1.0");
builder.type("text/xml; charset=utf-8");
if (!errors.hasErrors()) {
builder.entity(
"<OpenRosaResponse xmlns=\"http://openrosa.org/http/response\">"
+ "<message>success</message>"
+ "</OpenRosaResponse>");
LOGGER.debug("Successful OpenRosa submission");
} else {
LOGGER.error("Failed OpenRosa submission");
response.setStatus(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
response.flushBuffer();
}
} catch (Exception e) {
LOGGER.error(e.getMessage());
LOGGER.error(ExceptionUtils.getStackTrace(e));
return builder.status(javax.ws.rs.core.Response.Status.INTERNAL_SERVER_ERROR).build();
}
try {
// Notify Participate of successful form submission.
String pManageUrl = CoreResources.getField("portalURL") + "/app/rest/oc/submission";
Submission submission = new Submission();
Study pManageStudy = new Study();
pManageStudy.setInstanceUrl(
CoreResources.getField("sysURL.base") + "rest2/openrosa/" + studyOID);
pManageStudy.setStudyOid(studyOID);
submission.setStudy(pManageStudy);
submission.setStudy_event_def_id(studyEventDefnId);
submission.setStudy_event_def_ordinal(studyEventOrdinal);
submission.setCrf_version_id(crfvdao.findByOid(crfVersionOID).getId());
RestTemplate rest = new RestTemplate();
String result = rest.postForObject(pManageUrl, submission, String.class);
LOGGER.debug("Notified Participate of CRF submission with a result of: " + result);
} catch (Exception e) {
LOGGER.error("Unable to notify Participate of successful CRF submission.");
LOGGER.error(e.getMessage());
LOGGER.error(ExceptionUtils.getStackTrace(e));
}
return builder.status(javax.ws.rs.core.Response.Status.CREATED).build();
}