public String getCompileClassPath() {
String compileClassPath =
StringHelper.removeQuotesOS("\".")
+ File.pathSeparator
+ Oncotcap.getInstallDir()
+ "bin"
+ File.pathSeparator
+ Oncotcap.getProgramDir()
+ File.pathSeparator
+ Oncotcap.getInstallDir()
+ "lib"
+ File.separator
+ "tools.jar"
+ File.pathSeparator
+ Oncotcap.getInstallDir()
+ "lib"
+ File.separator
+ "protege.jar"
+ File.pathSeparator
+ FileHelper.sansTrailingSeparator(Oncotcap.getTempPath());
// packageBaseName;
String xtraPath = Oncotcap.getExtraCompilerClassPath().trim();
if (xtraPath != null && !xtraPath.equals("")) {
if (!xtraPath.startsWith(File.pathSeparator))
compileClassPath = compileClassPath + File.pathSeparator;
compileClassPath = compileClassPath + xtraPath;
}
String strPluginDir = Oncotcap.getInstallDir() + "plugins";
if (FileHelper.fileExists(strPluginDir)) {
strPluginDir = strPluginDir + File.separator;
File pluginDir = new File(strPluginDir);
{
if (pluginDir.isDirectory()) {
File[] jars = pluginDir.listFiles();
if (jars != null) {
for (int n = 0; n < jars.length; n++) {
if (jars[n].getName().endsWith(".jar"))
compileClassPath =
compileClassPath + File.pathSeparator + strPluginDir + jars[n].getName();
}
}
}
}
}
compileClassPath = compileClassPath + StringHelper.removeQuotesOS("\"");
return (compileClassPath);
}
/* Use this constructor to run an existing model externally to OncBrowser.
* So far, it is not used (april 2006 - rd).
*/
public PackageDir(String dirName) {
File pd = new File(dirName);
try {
if (pd.exists() && pd.isDirectory()) {
File[] files = pd.listFiles();
for (int i = 0; i < files.length; i++) System.out.println("PackageDir: " + files[i]);
}
packageName = dirName;
packagePath = new String(Oncotcap.getTempPath() + packageName);
packagePath = packagePath.trim();
if (!packagePath.endsWith(File.separator)) packagePath = packagePath.concat(File.separator);
} catch (SecurityException e) {
Logger.log("Error can not create temporary directory");
}
}
public PackageDir(boolean numbered) throws TempDirFullException {
// this should be rewritten to take into account that multiple
// copies of the program are running and trying to create these
// directories on the same machine. Possibly, a file that can
// be locked that contains the next incremental name, if the
// file is locked, spin on it for 10 seconds or so.
File pd;
if (numbered) {
pd = new File(nextName());
int trys = 1;
while (pd.exists() && trys <= tempDirLimit) {
pd = new File(nextName());
trys++;
}
if (trys > tempDirLimit) throw (new TempDirFullException());
} else {
pd = new File(standardName());
}
try {
if (pd.exists()) {
if (pd.isDirectory()) {
File[] files = pd.listFiles();
for (int i = 0; i < files.length; i++) files[i].delete();
}
} else if (!pd.mkdir()) {
Logger.log("PackageDir(): error can not create temporary directory " + pd);
packageName = null;
packagePath = null;
}
packagePath = packagePath.trim();
if (!packagePath.endsWith(File.separator)) packagePath = packagePath.concat(File.separator);
} catch (SecurityException e) {
Logger.log("Error can not create temporary directory");
}
}