/**
* Tests the default group of an experimenter.
*
* @throws Exception Thrown if an error occurred.
*/
@Test
public void testChangeDefaultGroup() throws Exception {
// Create 2 groups and add a user
String uuid1 = UUID.randomUUID().toString();
ExperimenterGroup g1 = new ExperimenterGroupI();
g1.setName(omero.rtypes.rstring(uuid1));
g1.getDetails().setPermissions(new PermissionsI("rw----"));
String uuid2 = UUID.randomUUID().toString();
ExperimenterGroup g2 = new ExperimenterGroupI();
g2.setName(omero.rtypes.rstring(uuid2));
g2.getDetails().setPermissions(new PermissionsI("rw----"));
IAdminPrx svc = root.getSession().getAdminService();
IQueryPrx query = root.getSession().getQueryService();
long id1 = svc.createGroup(g1);
long id2 = svc.createGroup(g2);
ParametersI p = new ParametersI();
p.addId(id1);
ExperimenterGroup eg1 =
(ExperimenterGroup)
query.findByQuery("select distinct g from ExperimenterGroup g where g.id = :id", p);
p = new ParametersI();
p.addId(id2);
ExperimenterGroup eg2 =
(ExperimenterGroup)
query.findByQuery("select distinct g from ExperimenterGroup g where g.id = :id", p);
Experimenter e = new ExperimenterI();
e.setOmeName(omero.rtypes.rstring(uuid1));
e.setFirstName(omero.rtypes.rstring("user"));
e.setLastName(omero.rtypes.rstring("user"));
List<ExperimenterGroup> groups = new ArrayList<ExperimenterGroup>();
// method tested elsewhere
ExperimenterGroup userGroup = svc.lookupGroup(USER_GROUP);
groups.add(eg1);
groups.add(eg2);
groups.add(userGroup);
long id = svc.createExperimenter(e, eg1, groups);
e = svc.lookupExperimenter(uuid1);
List<GroupExperimenterMap> links = e.copyGroupExperimenterMap();
assertTrue(groups.get(0).getId().getValue() == eg1.getId().getValue());
svc.setDefaultGroup(e, eg2);
e = svc.lookupExperimenter(uuid1);
links = e.copyGroupExperimenterMap();
groups = new ArrayList<ExperimenterGroup>();
for (GroupExperimenterMap link : links) {
groups.add(link.getParent());
}
assertTrue(groups.get(0).getId().getValue() == eg2.getId().getValue());
}
/**
* Tests the deletion of an experimenter.
*
* @throws Exception Thrown if an error occurred.
*/
@Test
public void testDeleteExperimenter() throws Exception {
// First create a new user.
String uuid = UUID.randomUUID().toString();
Experimenter e = new ExperimenterI();
e.setOmeName(omero.rtypes.rstring(uuid));
e.setFirstName(omero.rtypes.rstring("user"));
e.setLastName(omero.rtypes.rstring("user"));
IAdminPrx svc = root.getSession().getAdminService();
// already tested
ExperimenterGroup g = new ExperimenterGroupI();
g.setName(omero.rtypes.rstring(uuid));
g.getDetails().setPermissions(new PermissionsI("rw----"));
// create group.
svc.createGroup(g);
long id = svc.createUser(e, uuid);
e = svc.lookupExperimenter(uuid);
svc.deleteExperimenter(e);
ParametersI p = new ParametersI();
p.addId(id);
IQueryPrx query = root.getSession().getQueryService();
e =
(Experimenter)
query.findByQuery("select distinct e from Experimenter e where e.id = :id", p);
assertNull(e);
}
/**
* Tests the creation of a group with permission <code>rwrw--</code>.
*
* @throws Exception Thrown if an error occurred.
*/
@Test
public void testCreateGroupRWRW() throws Exception {
String uuid = UUID.randomUUID().toString();
ExperimenterGroup g = new ExperimenterGroupI();
g.setName(omero.rtypes.rstring(uuid));
g.getDetails().setPermissions(new PermissionsI("rwrw--"));
IAdminPrx svc = root.getSession().getAdminService();
long id = svc.createGroup(g);
// Load the group
IQueryPrx query = root.getSession().getQueryService();
ParametersI p = new ParametersI();
p.addId(id);
ExperimenterGroup eg =
(ExperimenterGroup)
query.findByQuery("select distinct g from ExperimenterGroup g where g.id = :id", p);
assertNotNull(eg);
assertTrue(eg.getName().getValue().equals(uuid));
// test permissions
Permissions perms = eg.getDetails().getPermissions();
assertTrue(perms.isUserRead());
assertTrue(perms.isUserWrite());
assertTrue(perms.isGroupRead());
assertTrue(perms.isGroupWrite());
assertFalse(perms.isWorldRead());
assertFalse(perms.isWorldWrite());
}
/**
* Tests the update of the details of the user currently logged in using the <code>
* updateExperimenter</code> method.
*
* @throws Exception Thrown if an error occurred.
*/
@Test(enabled = true)
public void testUpdateExperimenterByUserUsingUpdateExperimenter() throws Exception {
// First create a new user.
String uuid = UUID.randomUUID().toString();
Experimenter e = new ExperimenterI();
e.setOmeName(omero.rtypes.rstring(uuid));
e.setFirstName(omero.rtypes.rstring("user"));
e.setLastName(omero.rtypes.rstring("user"));
IAdminPrx svc = root.getSession().getAdminService();
// already tested
ExperimenterGroup g = new ExperimenterGroupI();
g.setName(omero.rtypes.rstring(uuid));
g.getDetails().setPermissions(new PermissionsI("rw----"));
// create group.
svc.createGroup(g);
long id = svc.createUser(e, uuid);
IQueryPrx query = root.getSession().getQueryService();
ParametersI p = new ParametersI();
p.addId(id);
e =
(Experimenter)
query.findByQuery("select distinct e from Experimenter e where e.id = :id", p);
assertNotNull(e);
String name = "userModified";
// uuid = UUID.randomUUID().toString();
e.setOmeName(omero.rtypes.rstring(uuid));
e.setFirstName(omero.rtypes.rstring(name));
e.setLastName(omero.rtypes.rstring(name));
//
// owner logs in.
omero.client client = newOmeroClient();
client.createSession(uuid, uuid);
init(client);
iAdmin.updateExperimenter(e);
e =
(Experimenter)
query.findByQuery("select distinct e from Experimenter e where e.id = :id", p);
assertNotNull(e);
assertTrue(e.getOmeName().getValue().equals(uuid));
assertTrue(e.getFirstName().getValue().equals(name));
assertTrue(e.getLastName().getValue().equals(name));
}
/**
* Tests the creation of a user using the <code>createUser</code> method.
*
* @throws Exception Thrown if an error occurred.
*/
@Test
public void testCreateUser() throws Exception {
String uuid = UUID.randomUUID().toString();
Experimenter e = new ExperimenterI();
e.setOmeName(omero.rtypes.rstring(uuid));
e.setFirstName(omero.rtypes.rstring("user"));
e.setLastName(omero.rtypes.rstring("user"));
IAdminPrx svc = root.getSession().getAdminService();
// already tested
ExperimenterGroup g = new ExperimenterGroupI();
g.setName(omero.rtypes.rstring(uuid));
g.getDetails().setPermissions(new PermissionsI("rw----"));
long groupId = svc.createGroup(g);
long id = svc.createUser(e, uuid);
IQueryPrx query = root.getSession().getQueryService();
// Check if we have a user
ParametersI p = new ParametersI();
p.addId(id);
e =
(Experimenter)
query.findByQuery("select distinct e from Experimenter e where e.id = :id", p);
assertNotNull(e);
assertTrue(e.getOmeName().getValue().equals(uuid));
// check if we are in the correct group i.e. user and uuid
// now check if the user is in correct groups.
ExperimenterGroup userGroup = svc.lookupGroup(USER_GROUP);
List<Long> ids = new ArrayList<Long>();
ids.add(groupId);
ids.add(userGroup.getId().getValue());
p = new ParametersI();
p.addLongs("gids", ids);
List list =
(List)
query.findAllByQuery(
"select m "
+ "from GroupExperimenterMap as m "
+ "left outer join fetch m.child "
+ "left outer join fetch m.parent"
+ " where m.parent.id in (:gids)",
p);
assertNotNull(list);
Iterator i = list.iterator();
GroupExperimenterMap geMap;
int count = 0;
while (i.hasNext()) {
geMap = (GroupExperimenterMap) i.next();
if (geMap.getChild().getId().getValue() == id) count++;
}
assertTrue(count == 2);
}
/**
* Retrieve the log file.
*
* @param id The id of the file to load.
* @param session The OMERO session.
* @return See above.
* @throws Throwable Thrown if an error occurred while loading file.
*/
private File retrieveLogFile(Long id, ServiceFactoryPrx session) throws Throwable {
if (id == null) return null;
// dowload the file
StringBuffer buf = new StringBuffer();
buf.append("importLog_");
buf.append(id);
File logfile = File.createTempFile(buf.toString(), ".log");
logfile.deleteOnExit();
IQueryPrx svc = session.getQueryService();
ParametersI param = new ParametersI();
param.map.put("id", omero.rtypes.rlong(id));
OriginalFile of =
(OriginalFile) svc.findByQuery("select p from OriginalFile as p where p.id = :id", param);
if (of == null) return null;
final String path = logfile.getAbsolutePath();
RawFileStorePrx store = null;
try {
store = session.createRawFileStore();
store.setFileId(id);
} catch (Throwable e) {
store.close();
return null; // Never reached.
}
try {
long size = -1;
long offset = 0;
int INC = 262144;
FileOutputStream stream = new FileOutputStream(logfile);
try {
try {
size = store.size();
for (offset = 0; (offset + INC) < size; ) {
stream.write(store.read(offset, INC));
offset += INC;
}
} finally {
stream.write(store.read(offset, (int) (size - offset)));
stream.close();
}
} catch (Exception e) {
log.error("Cannot write log file", e);
if (stream != null) stream.close();
}
} catch (IOException e) {
log.error("Cannot write log file", e);
} finally {
store.close();
}
return logfile;
}