@Test(dependsOnMethods = {"testMetadataLevel"})
public void testLogicalChannelRefs() {
Class<? extends IObject> klass = LogicalChannel.class;
List<IObjectContainer> containers = store.getIObjectContainers(klass);
referenceCache = store.getReferenceCache();
for (IObjectContainer container : containers) {
LSID lsid = new LSID(container.LSID);
if (!referenceCache.containsKey(lsid)) {
continue;
}
List<LSID> references = referenceCache.get(lsid);
assertTrue(references.size() > 0);
for (LSID referenceLSID : references) {
String asString = referenceLSID.toString();
if (asString.endsWith(OMEROMetadataStoreClient.OMERO_EMISSION_FILTER_SUFFIX)
|| asString.endsWith(OMEROMetadataStoreClient.OMERO_EXCITATION_FILTER_SUFFIX)) {
int index = asString.lastIndexOf(':');
referenceLSID = new LSID(asString.substring(0, index));
}
assertNotNull(referenceLSID);
List<Class<? extends IObject>> klasses = new ArrayList<Class<? extends IObject>>();
klasses.add(Filter.class);
klasses.add(FilterSet.class);
String e = String.format("LSID %s not found in container cache", referenceLSID);
assertTrue(e, authoritativeLSIDExists(klasses, referenceLSID));
}
}
}
/**
* Dumps <code>TRACE</code> data for a given metadata store.
*
* @param store The store to dump <code>TRACE</code> data for.
*/
private void traceMetadataStoreData(OMEROMetadataStoreClient store) {
containerCache = store.getContainerCache();
referenceCache = store.getReferenceCache();
log.trace("Starting container cache...");
for (LSID key : containerCache.keySet()) {
String s =
String.format(
"%s == %s,%s",
key, containerCache.get(key).sourceObject, containerCache.get(key).LSID);
log.trace(s);
}
log.trace("Starting reference cache...");
for (LSID key : referenceCache.keySet()) {
for (LSID value : referenceCache.get(key)) {
String s = String.format("%s == %s", key, value);
log.trace(s);
}
}
log.trace("containerCache contains " + containerCache.size() + " entries.");
log.trace("referenceCache contains " + store.countCachedReferences(null, null) + " entries.");
List<IObjectContainer> imageContainers = store.getIObjectContainers(Image.class);
for (IObjectContainer imageContainer : imageContainers) {
Image image = (Image) imageContainer.sourceObject;
log.trace(
String.format(
"Image indexes:%s name:%s", imageContainer.indexes, image.getName().getValue()));
}
}
@Test(dependsOnMethods = {"testMetadataLevel"})
public void testOTFIsReferenced() {
Class<? extends IObject> klass = OTF.class;
List<IObjectContainer> containers = store.getIObjectContainers(klass);
referenceCache = store.getReferenceCache();
for (IObjectContainer container : containers) {
LSID lsid = new LSID(container.LSID);
for (LSID target : referenceCache.keySet()) {
for (LSID reference : referenceCache.get(target)) {
if (reference.equals(lsid)) {
return;
}
}
}
fail(String.format("%s %s not referenced by any object.", klass, lsid));
}
}
@Test(dependsOnMethods = {"testMetadataLevel"})
public void testLightSourceSettingsLightSourceRef() {
Class<? extends IObject> klass = LightSettings.class;
List<IObjectContainer> containers = store.getIObjectContainers(klass);
referenceCache = store.getReferenceCache();
for (IObjectContainer container : containers) {
LSID lsid = new LSID(container.LSID);
String e = String.format("%s %s not found in reference cache", klass, container.LSID);
assertTrue(e, referenceCache.containsKey(lsid));
List<LSID> references = referenceCache.get(lsid);
assertTrue(references.size() > 0);
for (LSID referenceLSID : references) {
assertNotNull(referenceLSID);
klass = LightSource.class;
e = String.format("%s with LSID %s not found in container cache", klass, referenceLSID);
assertTrue(e, authoritativeLSIDExists(klass, referenceLSID));
}
}
}
@Test(dependsOnMethods = {"testMetadataLevel"})
public void testFilterSetRefs() {
Class<? extends IObject> klass = FilterSet.class;
List<IObjectContainer> containers = store.getIObjectContainers(klass);
referenceCache = store.getReferenceCache();
for (IObjectContainer container : containers) {
LSID lsid = new LSID(container.LSID);
if (!referenceCache.containsKey(lsid)) {
continue;
}
List<LSID> references = referenceCache.get(lsid);
assertTrue(references.size() > 0);
for (LSID referenceLSID : references) {
assertNotNull(referenceLSID);
List<Class<? extends IObject>> klasses = new ArrayList<Class<? extends IObject>>();
klasses.add(Filter.class);
klasses.add(Dichroic.class);
String e = String.format("LSID %s not found in container cache", referenceLSID);
assertTrue(e, authoritativeLSIDExists(klasses, referenceLSID));
}
}
}
