private void reportOnWorkflow(
String workflowAccession, WorkflowRunStatus status, Date earlyDate, Date lateDate)
throws IOException {
String title = "";
if (workflowAccession != null) {
title = "workflow_" + workflowAccession;
}
if (status != null) {
title += "status_" + status.name();
}
if (earlyDate != null) {
title += "from" + dateFormat.format(earlyDate);
}
if (lateDate != null) {
title += "to" + dateFormat.format(lateDate);
}
initWriter(title);
String report;
try {
Integer workflowParameter = null;
if (workflowAccession != null) {
workflowParameter = Integer.parseInt(workflowAccession);
}
report = metadata.getWorkflowRunReport(workflowParameter, status, earlyDate, lateDate);
} catch (RuntimeException e) {
Log.fatal("Workflow not found", e);
ret = new ReturnValue(ReturnValue.INVALIDPARAMETERS);
return;
}
if (options.has("human")) {
writer.write(TabExpansionUtil.expansion(report));
return;
}
writer.write(report);
}
private void reportOnWorkflowRun(String workflowRunAccession) throws IOException {
String title = "workflowrun_" + workflowRunAccession;
initWriter(title);
String report;
try {
report = metadata.getWorkflowRunReport(Integer.parseInt(workflowRunAccession));
} catch (RuntimeException e) {
println("Workflow run not found");
ret = new ReturnValue(ReturnValue.INVALIDPARAMETERS);
return;
}
if (options.has("human")) {
writer.write(TabExpansionUtil.expansion(report));
return;
}
writer.write(report);
}