private void executeSynthetic() {
int toPercentCoef, percent = 0;
int userNb = Network.size();
HashMap<Integer, VirtualEntity> coords;
SolipsisProtocol solipsis;
VirtualEntity entity;
System.err.println("Populating Virtual World with " + userNb + " participants...");
VirtualWorldDistribution vwd =
new VirtualWorldDistribution(
this.distribution,
userNb,
Globals.zoneNb,
Globals.outOfZoneNb,
Globals.mapSize,
Globals.zoneSize,
Globals.smallZoneSize,
Globals.smallZoneNb,
this.applicativeLayerId);
Globals.distribution = vwd;
coords = vwd.getDistribution();
Iterator it = coords.entrySet().iterator();
toPercentCoef = userNb / 100;
System.err.println("Joining nodes...");
for (int i = 0; i < userNb; i++) {
entity = (VirtualEntity) ((Map.Entry) it.next()).getValue();
solipsis = (SolipsisProtocol) Network.get(i).getProtocol(applicativeLayerId);
solipsis.setVirtualEntity(entity);
solipsis.setPeersimNodeId(i);
entity.setProtocol(solipsis);
entity.setOrder(i + 1);
if (i > 0) {
solipsis.join((SolipsisProtocol) Network.get(i - 1).getProtocol(applicativeLayerId));
}
if (i % toPercentCoef == 0) System.err.println(++percent + "%");
// System.out.println("peer "+i+":
// "+solipsis.getVirtualEntity().getNeighbors().size());
}
System.err.println("Done.");
// System.out.println("uci2");
System.err.println("Normalizing Solipsis topology...");
percent = 0;
it = coords.entrySet().iterator();
for (int i = 0; i < userNb; i++) {
entity = (VirtualEntity) ((Map.Entry) it.next()).getValue();
// System.out.println("peer "+i+": "+entity.getNeighbors().size());
entity.getProtocol().finalizeKnowledgeZone();
// System.out.println("peer "+i+": "+entity.getNeighbors().size());
entity.getProtocol().simplifyTopology();
// System.out.println("peer "+i+": "+entity.getNeighbors().size());
if (i % (3 * toPercentCoef) == 0) System.err.println(++percent + "%");
}
it = coords.entrySet().iterator();
for (int i = 0; i < userNb; i++) {
entity = (VirtualEntity) ((Map.Entry) it.next()).getValue();
entity.refreshState();
if (i % (3 * toPercentCoef) == 0) System.err.println(++percent + "%");
}
it = coords.entrySet().iterator();
for (int i = 0; i < userNb; i++) {
entity = (VirtualEntity) ((Map.Entry) it.next()).getValue();
entity.getProtocol().maintainKnowledgeZone();
entity.getProtocol().finalizeKnowledgeZone();
entity.getProtocol().removeUnwantedNeighbors();
// System.out.println("peer "+i+": "+entity.getNeighbors().size());
if (i % (3 * toPercentCoef) == 0) System.err.println(++percent + "%");
}
System.out.println("Done.");
// for (int i = 0; i < 15; i++) {
// System.out.println("cycle...");
// Globals.distribution.animate();
//
// }
Globals.topologyIsReady = true;
System.err.println("Populated");
// System.err.println("Collisions:" + this.collisionCount());
// System.exit(2);
if (Globals.realTime) {
// VirtualWorldMonitor map = new VirtualWorldMonitor(vwd);
// Globals.monitor = map;
// map.showVirtualWorld();
Globals.recorder = new VirtualWorldRecorder();
} else {
Globals.evaluator = new StatisticsGatherer();
}
}
public boolean execute() {
if (CDState.getCycle() % period != 0) return false;
MycoCast mycocast = (MycoCast) Network.get(0).getProtocol(mycocastPid);
int bio = mycocast.countBiomass();
int ext = mycocast.countExtending();
int bra = mycocast.countBranching();
int imm = mycocast.countImmobile();
// Update vertices
Set<MycoNode> activeNodes = new HashSet<MycoNode>();
for (int i = 0; i < Network.size(); i++) {
MycoNode n = (MycoNode) Network.get(i);
activeNodes.add(n);
HyphaData data = n.getHyphaData();
// if (data.isBiomass()) { continue; }
if (graph.containsVertex(n)) {
graph.removeVertex(n);
}
if (!graph.containsVertex(n)) {
graph.addVertex(n);
}
}
Set<MycoNode> jungNodes = new HashSet<MycoNode>(graph.getVertices());
jungNodes.removeAll(activeNodes);
for (MycoNode n : jungNodes) {
graph.removeVertex(n);
}
// Update edges
for (int i = 0; i < Network.size(); i++) {
MycoNode n = (MycoNode) Network.get(i);
HyphaData data = n.getHyphaData();
HyphaLink link = n.getHyphaLink();
synchronized (graph) {
// We now add in all links and tune out display in Visualizer
java.util.List<MycoNode> neighbors = (java.util.List<MycoNode>) link.getNeighbors();
//// Adding only links to hypha thins out links to biomass
// (java.util.List<MycoNode>) link.getHyphae();
Collection<MycoNode> jungNeighbors = graph.getNeighbors(n);
// Remove edges from Jung graph that are not in peersim graph
for (MycoNode o : jungNeighbors) {
if (!neighbors.contains(o)) {
MycoEdge edge = graph.findEdge(n, o);
while (edge != null) {
graph.removeEdge(edge);
edge = graph.findEdge(n, o);
}
}
}
// Add missing edges to Jung graph that are in peersim graph
for (MycoNode o : neighbors) {
if (graph.findEdge(n, o) == null) {
MycoEdge edge = new MycoEdge();
graph.addEdge(edge, n, o, EdgeType.DIRECTED);
}
}
}
// log.finest("VERTICES: " + graph.getVertices());
// log.finest("EDGES: " + graph.getEdges());
}
for (ChangeListener cl : changeListeners) {
cl.stateChanged(new ChangeEvent(graph));
}
if (walking) {
try {
Thread.sleep(walkDelay);
} catch (InterruptedException e) {
}
stepBlocked = false;
}
try {
while (stepBlocked && !noBlock) {
synchronized (JungGraphObserver.class) {
JungGraphObserver.class.wait();
}
}
} catch (InterruptedException e) {
stepBlocked = true;
}
stepBlocked = true;
// System.out.println(graph.toString());
return false;
}