public void linkToViewPort(JViewport vp, boolean horizontal) {
ViewportLayoutEx l = new ViewportLayoutEx();
l.horizontalLink = horizontal;
l.linkedViewPort = vp;
setLayout(l);
vp.addChangeListener(this);
}
@Override
public void addNotify() {
super.addNotify();
Component c = getParent();
// Keep scrolling of the row table in sync with the main table.
if (c instanceof JViewport) {
JViewport viewport = (JViewport) c;
viewport.addChangeListener(this);
}
}
public void viewportSet(JViewport viewport) {
viewport.addChangeListener(
new ChangeListener() {
@Override
public void stateChanged(ChangeEvent e) {
TableModel model = getModel();
if (model instanceof AbstractTableModel) {
Couple<Integer> visibleRows = ScrollingUtil.getVisibleRows(VcsLogGraphTable.this);
((AbstractTableModel) model)
.fireTableChanged(
new TableModelEvent(
model,
visibleRows.first - 1,
visibleRows.second,
GraphTableModel.ROOT_COLUMN));
}
}
});
}
private void initGui(AnnotatedFeatureI annot) {
translationViewer = new TranslationViewer(editorPanel);
translationViewer.setBackground(Color.black);
transcriptComboBox = new JComboBox();
lengthLabel = new JLabel("Translation length: <no feature selected>");
lengthLabel.setForeground(Color.black);
findButton = new JButton("Find sequence...");
clearFindsButton = new JButton("Clear search hits");
// Disable until we actually get search results
clearFindsButton.setEnabled(false);
goToButton = new JButton("GoTo...");
showIntronBox = new JCheckBox("Show introns in translation viewer", true);
showIntronBox.setBackground(Color.white);
followSelectionCheckBox = new JCheckBox("Follow external selection", false);
followSelectionCheckBox.setBackground(Color.white);
upstream_button = new JButton();
downstream_button = new JButton();
colorSwatch = new JPanel();
setSize(824, 500);
JScrollPane pane = new JScrollPane(editorPanel);
pane.setHorizontalScrollBarPolicy(
JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED); // RAY: SET SCROLL POLICY HERE! WAS
// HORIZONTAL_SCROLLBAR_NEVER
// pane.setColumnHeaderView(new BaseFineEditorRowHeader(editorPanel)); // RAY: setRowHeader need
// to create column header
pane.setColumnHeaderView(new BaseFineEditorHorizontalColHeader(editorPanel));
viewport = pane.getViewport();
colorSwatch.setPreferredSize(new Dimension(10, 10));
getContentPane().setBackground(Color.white);
getContentPane().setLayout(new BorderLayout());
getContentPane().add(colorSwatch, "North");
getContentPane().add(pane, "Center");
Box transcriptListBox = new Box(BoxLayout.X_AXIS);
JLabel tranLabel;
// 1 LEVEL ANNOT
if (annot.isAnnotTop()) tranLabel = new JLabel("Annotation: ");
else // 3-level
tranLabel = new JLabel("Transcript: ");
tranLabel.setForeground(Color.black);
transcriptListBox.add(Box.createHorizontalStrut(5));
transcriptListBox.add(tranLabel);
transcriptListBox.setBackground(Color.white);
transcriptComboBox.setMaximumSize(new Dimension(300, 30));
transcriptListBox.add(transcriptComboBox);
transcriptListBox.add(Box.createHorizontalGlue());
transcriptListBox.add(Box.createHorizontalStrut(5));
transcriptListBox.add(lengthLabel);
transcriptListBox.add(Box.createHorizontalGlue());
Box checkboxesTop = new Box(BoxLayout.X_AXIS);
checkboxesTop.setBackground(Color.white);
checkboxesTop.add(Box.createHorizontalStrut(5));
checkboxesTop.add(findButton);
checkboxesTop.add(Box.createHorizontalStrut(10));
checkboxesTop.add(clearFindsButton);
checkboxesTop.add(Box.createHorizontalStrut(15));
checkboxesTop.add(goToButton);
checkboxesTop.add(Box.createHorizontalGlue());
Box checkboxesBottom = new Box(BoxLayout.X_AXIS);
checkboxesBottom.add(showIntronBox);
checkboxesBottom.add(Box.createHorizontalGlue());
checkboxesBottom.add(Box.createHorizontalStrut(10));
checkboxesBottom.add(followSelectionCheckBox);
Box checkboxes = new Box(BoxLayout.Y_AXIS);
checkboxes.add(checkboxesTop);
checkboxes.add(checkboxesBottom);
Box labelPanel = new Box(BoxLayout.Y_AXIS);
labelPanel.setBackground(Color.white);
labelPanel.add(transcriptListBox);
labelPanel.add(Box.createVerticalStrut(5));
labelPanel.add(checkboxes);
Box navPanel = new Box(BoxLayout.Y_AXIS);
navPanel.setBackground(Color.white);
navPanel.add(upstream_button);
navPanel.add(Box.createVerticalStrut(10));
navPanel.add(downstream_button);
navPanel.add(Box.createVerticalGlue());
Box textBoxes = new Box(BoxLayout.X_AXIS);
textBoxes.setBackground(Color.white);
textBoxes.add(labelPanel);
textBoxes.add(navPanel);
Box detailPanel = new Box(BoxLayout.Y_AXIS);
detailPanel.setBackground(Color.white);
detailPanel.add(translationViewer);
detailPanel.add(textBoxes);
getContentPane().add(detailPanel, "South");
validateTree();
scrollListener = new FineEditorScrollListener();
viewport.addChangeListener(scrollListener);
transcriptComboBox.addKeyListener(
new KeyAdapter() {
public void keyPressed(KeyEvent e) {
if (e.getKeyCode() == KeyEvent.VK_U && (e.getModifiers() & KeyEvent.CTRL_MASK) != 0) {
CurationManager.getActiveCurationState().getTransactionManager().undo(this);
}
}
});
}