private JPanel buildCheckboxPanel() {
JPanel tp = new JPanel();
tp.setBorder(BorderFactory.createTitledBorder("Webserver Options"));
tp.setLayout(new GridLayout(1, 2));
String doLocalServer = JConfig.queryConfiguration("server.enabled", "false");
String doAllowSyndication = JConfig.queryConfiguration("allow.syndication", "true");
localServerBrowseBox = new JCheckBox("Use internal web server");
localServerBrowseBox.setToolTipText(
"<html><body>Turning this on enables JBidwatchers internal web server; 'Show in Browser' will go through JBidwatcher<br>first, in order to allow it to show old/deleted auctions,and to avoid the need to log in regularly.<br>The internal web server is password protected with your auction server username/password.</body></html>");
// localServerBrowseBox.setToolTipText("Turning this on enables JBidwatchers internal web
// server; 'Show in Browser' will go through JBidwatcher first, in order to allow it to show
// old/deleted auctions, and to avoid the need to log in regularly. The internal web server is
// password protected with your auction server username/password.");
localServerBrowseBox.setSelected(doLocalServer.equals("true"));
tp.add(localServerBrowseBox);
openSyndication = new JCheckBox("Allow syndication to bypass authentication");
openSyndication.setToolTipText(
"Allows syndication requests and thumbnail requests to be resolved without requiring a username/password.");
openSyndication.setSelected(doAllowSyndication.equals("true"));
tp.add(openSyndication);
return tp;
}
// Modifies button text and tool tips
private void setPrintButtonText() {
if (printPreviewBox.isSelected()) {
printButton.setText(Bundle.getMessage("Preview"));
printButton.setToolTipText(Bundle.getMessage("PreviewSelectedTip"));
buildReportBox.setToolTipText(Bundle.getMessage("BuildReportPreviewTip"));
} else {
printButton.setText(Bundle.getMessage("Print"));
printButton.setToolTipText(Bundle.getMessage("PrintSelectedTip"));
buildReportBox.setToolTipText(Bundle.getMessage("BuildReportPrintTip"));
}
}
private JCheckBox getChkInverse() {
if (chkInverse == null) {
chkInverse = new JCheckBox();
chkInverse.setToolTipText(Constant.messages.getString("search.toolbar.tooltip.inverse"));
}
return chkInverse;
}
public static JCheckBox addCheckBox(
String text,
Function method,
boolean selected,
String tooltip,
boolean enabled,
boolean visible,
final IClientPluginAccess pluginAccess) {
JCheckBox box = new JCheckBox(text);
box.setSelected(selected);
box.setEnabled(enabled);
box.setVisible(visible);
box.setToolTipText(tooltip);
final FunctionDefinition functionDef = new FunctionDefinition(method);
box.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
JCheckBox source = (JCheckBox) e.getSource();
Object args[] = new Object[4];
args[0] = ((Toolbar) source.getParent()).getName();
args[1] = ((Toolbar) source.getParent()).getDisplayName();
args[2] = new Boolean(source.isSelected());
args[3] = source.getText();
functionDef.executeAsync(pluginAccess, args);
}
});
return box;
}
/**
* Creates a new checkbox with manageable width.
*
* @param aText Text of the checkbox.
* @param aToolTip Tooltip text for the checkbox. Set this to <code>null</code> if no tooltip is
* to be displayed.
* @param aListener Checkbox click's listener.
* @return Newly created instance of <code>JCheckBox</code>.
*/
public static JCheckBox createCheckBox(String aText, String aToolTip, ActionListener aListener) {
JCheckBox button = new JCheckBox(aText);
button.setToolTipText(aToolTip);
button.addActionListener(aListener);
button.setMaximumSize(new Dimension(Short.MAX_VALUE, button.getHeight()));
return button;
}
private void refreshLanguage() {
uploadPrioLabel.setText(language.getString("Options.news.1.messageUploadPriority") + " (2)");
downloadPrioLabel.setText(
language.getString("Options.news.1.messageDownloadPriority") + " (2)");
useOneConnectionForMessagesCheckBox.setText(
language.getString("Options.news.1.useOneConnectionForMessages"));
displayDaysLabel.setText(language.getString("Options.news.1.numberOfDaysToDisplay") + " (15)");
downloadDaysLabel.setText(
language.getString("Options.news.1.numberOfDaysToDownloadBackwards") + " (5)");
messageBaseLabel.setText(language.getString("Options.news.1.messageBase") + " (news)");
alwaysDownloadBackloadCheckBox.setText(
language.getString("Options.news.1.alwaysDownloadBackload"));
alwaysDownloadBackloadCheckBox.setToolTipText(
language.getString("Options.news.1.alwaysDownloadBackload.tooltip"));
final String minutes = language.getString("Options.common.minutes");
minimumIntervalLabel.setText(
language.getString("Options.news.3.minimumUpdateInterval") + " (" + minutes + ") (45)");
concurrentUpdatesLabel.setText(
language.getString("Options.news.3.numberOfConcurrentlyUpdatingBoards") + " (6)");
automaticBoardUpdateCheckBox.setText(language.getString("Options.news.3.automaticBoardUpdate"));
storeSentMessagesCheckBox.setText(language.getString("Options.news.1.storeSentMessages"));
silentlyRetryCheckBox.setText(language.getString("Options.news.3.silentlyRetryFailedMessages"));
final String off = language.getString("Options.common.off");
altEditCheckBox.setText(
language.getString("Options.miscellaneous.useEditorForWritingMessages") + " (" + off + ")");
}
public CommandLine(DoOperationActionListener opListener) {
setLayout(new GridBagLayout());
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridwidth = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.fill = GridBagConstraints.NONE;
gbc.insets = new Insets(0, 0, 0, 5);
add(new JLabel("cmd>"), gbc);
cmdText.setBorder(new LineBorder(Color.BLACK));
cmdText.setText("/");
cmdText.setLineWrap(true);
cmdText.setRows(1);
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.weightx = 100.0;
add(cmdText, gbc);
KeyStroke enterKey = KeyStroke.getKeyStroke(KeyEvent.VK_ENTER, 0, false);
cmdText.getInputMap().put(enterKey, SUBMIT_ACTION);
cmdText.getActionMap().put(SUBMIT_ACTION, opListener);
JPanel submitPanel = new JPanel(new GridLayout(2, 1));
submitButton.addActionListener(opListener);
submitButton.setToolTipText("Submit the command to the server.");
submitPanel.add(submitButton);
isVerbose.setToolTipText("Show the command's DMR request.");
submitPanel.add(isVerbose);
gbc.fill = GridBagConstraints.NONE;
gbc.anchor = GridBagConstraints.SOUTHEAST;
gbc.weightx = 1.0;
add(submitPanel, gbc);
}
public void actionPerformed(ActionEvent e) {
JCheckBox layer = new JCheckBox(tr("Separate Layer"));
layer.setToolTipText(tr("Select if the data should be downloaded into a new layer"));
layer.setSelected(Main.pref.getBoolean("download.newlayer"));
JPanel all = new JPanel(new GridBagLayout());
GridBagConstraints gc = new GridBagConstraints();
gc.fill = GridBagConstraints.HORIZONTAL;
gc.weightx = 1.0;
gc.anchor = GridBagConstraints.FIRST_LINE_START;
all.add(new JLabel(tr("Enter URL to download:")), gc);
HistoryComboBox uploadAdresses = new HistoryComboBox();
uploadAdresses.setToolTipText(tr("Enter an URL from where data should be downloaded"));
restoreUploadAddressHistory(uploadAdresses);
gc.gridy = 1;
all.add(uploadAdresses, gc);
gc.gridy = 2;
gc.fill = GridBagConstraints.BOTH;
gc.weighty = 1.0;
all.add(layer, gc);
ExtendedDialog dialog =
new ExtendedDialog(
Main.parent, tr("Download Location"), new String[] {tr("Download URL"), tr("Cancel")});
dialog.setContent(all, false /* don't embedded content in JScrollpane */);
dialog.setButtonIcons(new String[] {"download.png", "cancel.png"});
dialog.setToolTipTexts(
new String[] {tr("Start downloading data"), tr("Close dialog and cancel downloading")});
dialog.configureContextsensitiveHelp("/Action/OpenLocation", true /* show help button */);
dialog.showDialog();
if (dialog.getValue() != 1) return;
remindUploadAddressHistory(uploadAdresses);
openUrl(layer.isSelected(), uploadAdresses.getText());
}
public void crearPropiedad(
int min, int max, int defecto, String unidades, String nombrePropiedad) {
final SelectorPropiedad sp = new SelectorPropiedad(min, max);
sp.setLabelUnidades(unidades);
if (this.selectoresPropiedad.size() == 0) {
MouseAdapter ma =
new MouseAdapter() {
public void mouseClicked(MouseEvent mouseEvent) {
if (mouseEvent.getButton() == MouseEvent.BUTTON1 && mouseEvent.isControlDown()) {
CheckBoxMedida.super.setSelected(true);
for (int i = 0; i < CheckBoxMedida.this.selectoresPropiedad.size(); i++) {
JDialog jd = CheckBoxMedida.this.getDialogoSeleccionPropiedad(i);
jd.setVisible(true);
}
}
}
};
super.addMouseListener(ma);
}
sp.slider.setValue(defecto);
this.selectoresPropiedad.add(sp);
this.nombrePropiedad.add(nombrePropiedad);
super.setToolTipText("Ctrl + click to select " + nombrePropiedad);
}
public VcsGeneratedFilesPanel(Project project) {
myProject = project;
setLayout(new BorderLayout());
JPanel generatedFilesPanel = new JPanel(new BorderLayout());
generatedFilesPanel.setBorder(new TitledBorder("Generated Files"));
myIgnoreGeneratedFilesCheckBox.setToolTipText(
"Do not store generated files and model caches (source_gen/*, source_gen.caches/*) in repository");
generatedFilesPanel.add(myIgnoreGeneratedFilesCheckBox);
add(generatedFilesPanel, BorderLayout.NORTH);
}
/**
* Allow the tester to manage its own preferences
*
* @param testPanel The panel to add any preferences component
*/
public void addGui(JPanel testPanel) {
checkEnabled = new JCheckBox(name, enabled);
checkEnabled.setToolTipText(description);
testPanel.add(checkEnabled, GBC.std());
GBC a = GBC.eol();
a.anchor = GridBagConstraints.EAST;
checkBeforeUpload = new JCheckBox();
checkBeforeUpload.setSelected(testBeforeUpload);
testPanel.add(checkBeforeUpload, a);
}
private JPanel buildExtraSettings() {
JPanel tp = new JPanel();
tp.setBorder(BorderFactory.createTitledBorder("Snipe Settings"));
tp.setLayout(new BorderLayout());
autoSubtractShippingBox =
new JCheckBox("Subtract shipping/insurance from bid amounts by default");
autoSubtractShippingBox.setToolTipText(
"Determines the default behaviour of deducting shipping/insurance from bid amounts. This behaviour can be overridden on a per-bid basis.");
tp.add(autoSubtractShippingBox);
return tp;
}
private JCheckBox addCheckBoxRow(String name, String tip, boolean value, JPanel parent) {
JPanel box = new JPanel();
box.setLayout(new FlowLayout(FlowLayout.LEFT));
JCheckBox checkBox = new JCheckBox(name);
checkBox.setEnabled(true);
checkBox.addItemListener(this);
checkBox.setToolTipText(tip);
box.add(checkBox);
parent.add(box);
if (value) checkBox.setSelected(true);
else checkBox.setSelected(false);
return checkBox;
}
public SchemaTabs() {
super();
conflicts = new JPanel();
conflicts.setLayout(new BorderLayout());
auto = new JCheckBox("Auto-Resolve");
auto.setToolTipText("Automatically modify inferred schema from received Responses");
auto.setOpaque(false);
UISupport.setFixedSize(auto, 120, 20);
XmlBeansSettingsImpl settings = getRequest().getSettings();
if (settings.isSet(AUTO_INFER_SCHEMAS)) {
auto.setSelected(settings.getBoolean(AUTO_INFER_SCHEMAS));
}
auto.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent e) {
getRequest().getSettings().setBoolean(AUTO_INFER_SCHEMAS, auto.isSelected());
}
});
resolveButton = new JButton("Resolve conflicts");
resolveButton.setEnabled(false);
resolveButton.setActionCommand("resolve");
resolveButton.addActionListener(this);
JXToolBar toolbar = UISupport.createToolbar();
toolbar.addFixed(auto);
toolbar.addFixed(resolveButton);
log = new JLogList("Schema log");
conflicts.add(toolbar, BorderLayout.NORTH);
conflicts.add(log, BorderLayout.CENTER);
addTab("Conflicts", conflicts);
schemaList = new JList(InferredSchemaManager.getInferredSchema(service).getNamespaces());
schemaList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
schemaList.addListSelectionListener(this);
toolbar = UISupport.createToolbar();
toolbar.addFixed(UISupport.createToolbarButton(new RemoveNamespaceAction()));
JPanel listPanel = new JPanel();
listPanel.setLayout(new BorderLayout());
listPanel.add(toolbar, BorderLayout.NORTH);
listPanel.add(new JScrollPane(schemaList), BorderLayout.CENTER);
xsd = JXEditTextArea.createXmlEditor(false);
xsd.setEditable(false);
update();
addTab(
"Schemas", new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, listPanel, new JScrollPane(xsd)));
}
public DvcsCommitAdditionalComponent(
@NotNull final Project project, @NotNull CheckinProjectPanel panel) {
myCheckinPanel = panel;
myPanel = new JPanel(new GridBagLayout());
final Insets insets = new Insets(2, 2, 2, 2);
// add amend checkbox
GridBagConstraints c = new GridBagConstraints();
// todo change to MigLayout
c.gridx = 0;
c.gridy = 1;
c.gridwidth = 2;
c.anchor = GridBagConstraints.CENTER;
c.insets = insets;
c.weightx = 1;
c.fill = GridBagConstraints.HORIZONTAL;
myAmend = new NonFocusableCheckBox(DvcsBundle.message("commit.amend"));
myAmend.setMnemonic('m');
myAmend.setToolTipText(DvcsBundle.message("commit.amend.tooltip"));
myPreviousMessage = myCheckinPanel.getCommitMessage();
myAmend.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (myAmend.isSelected()) {
if (myPreviousMessage.equals(
myCheckinPanel
.getCommitMessage())) { // if user has already typed something, don't revert
// it
if (myMessagesForRoots == null) {
loadMessagesInModalTask(project); // load all commit messages for all repositories
}
String message = constructAmendedMessage();
if (!StringUtil.isEmptyOrSpaces(message)) {
myAmendedMessage = message;
substituteCommitMessage(myAmendedMessage);
}
}
} else {
// there was the amended message, but user has changed it => not reverting
if (myCheckinPanel.getCommitMessage().equals(myAmendedMessage)) {
myCheckinPanel.setCommitMessage(myPreviousMessage);
}
}
}
});
myPanel.add(myAmend, c);
}
protected void addPostQueryCheckBox(JXToolBar toolbar) {
postQueryCheckBox = new JCheckBox("Post QueryString", httpRequest.isPostQueryString());
postQueryCheckBox.setToolTipText("Controls if Query-parameters should be put in message body");
postQueryCheckBox.setOpaque(false);
postQueryCheckBox.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent e) {
httpRequest.setPostQueryString(postQueryCheckBox.isSelected());
enableBodyComponents();
}
});
postQueryCheckBox.setPreferredSize(new Dimension(130, 20));
toolbar.addFixed(postQueryCheckBox);
}
@Override
public void update(final AnActionEvent e) {
super.update(e);
Presentation presentation = e.getPresentation();
Object property = presentation.getClientProperty(CUSTOM_COMPONENT_PROPERTY);
if (property instanceof JCheckBox) {
JCheckBox checkBox = (JCheckBox) property;
checkBox.setText(presentation.getText());
checkBox.setToolTipText(presentation.getDescription());
checkBox.setMnemonic(presentation.getMnemonic());
checkBox.setDisplayedMnemonicIndex(presentation.getDisplayedMnemonicIndex());
checkBox.setSelected(Boolean.TRUE.equals(presentation.getClientProperty(SELECTED_PROPERTY)));
checkBox.setEnabled(presentation.isEnabled());
checkBox.setVisible(presentation.isVisible());
}
}
public SkeinforgeBooleanPreference(
String name, final String preferenceName, boolean defaultState, String toolTip) {
isSet = defaultState;
if (preferenceName != null) {
isSet = Base.preferences.getBoolean(preferenceName, defaultState);
}
component = new JCheckBox(name, isSet);
component.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
isSet = component.isSelected();
if (preferenceName != null) {
Base.preferences.putBoolean(preferenceName, isSet);
}
}
});
if (toolTip != null) {
component.setToolTipText(toolTip);
}
}
public AmendComponent(
@NotNull Project project,
@NotNull RepositoryManager<? extends Repository> repoManager,
@NotNull CheckinProjectPanel panel,
@NotNull String title) {
myRepoManager = repoManager;
myCheckinPanel = panel;
myAmend = new NonFocusableCheckBox(title);
myAmend.setMnemonic('m');
myAmend.setToolTipText(DvcsBundle.message("commit.amend.tooltip"));
myPreviousMessage = myCheckinPanel.getCommitMessage();
myAmend.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (myAmend.isSelected()) {
if (myPreviousMessage.equals(
myCheckinPanel
.getCommitMessage())) { // if user has already typed something, don't revert
// it
if (myMessagesForRoots == null) {
loadMessagesInModalTask(project); // load all commit messages for all repositories
}
String message = constructAmendedMessage();
if (!StringUtil.isEmptyOrSpaces(message)) {
myAmendedMessage = message;
substituteCommitMessage(myAmendedMessage);
}
}
} else {
// there was the amended message, but user has changed it => not reverting
if (myCheckinPanel.getCommitMessage().equals(myAmendedMessage)) {
myCheckinPanel.setCommitMessage(myPreviousMessage);
}
}
}
});
}
private void setupCheckboxes(List<SearchEngine> searchEngines, JPanel parent) {
final Map<JCheckBox, BooleanSetting> cBoxes = new HashMap<JCheckBox, BooleanSetting>();
ItemListener listener =
new ItemListener() {
public void itemStateChanged(ItemEvent e) {
if (areAll(false)) {
((JCheckBox) e.getItemSelectable()).setSelected(true);
}
if (resultPanel != null) {
resultPanel.filterChanged(new SearchEngineFilter(engineCheckboxes), 0);
}
}
};
for (SearchEngine se : searchEngines) {
JCheckBox cBox = new JCheckBox(se.getName());
cBox.setSelected(se.isEnabled());
cBox.setEnabled(se.isEnabled());
if (!cBox.isEnabled()) {
cBox.setToolTipText(
se.getName()
+ " "
+ I18n.tr(
"has been disabled on your FrostWire Search Options. (Go to Tools > Options > Search to enable)"));
}
parent.add(cBox);
cBoxes.put(cBox, se.getEnabledSetting());
cBox.addItemListener(listener);
engineCheckboxes.put(se, cBox);
}
}
public IECheckBoxWidgetView(
IEController ieController,
IECheckBoxWidget model,
boolean addDnDSupport,
IEWOComponentView view) {
super(ieController, model, addDnDSupport, view);
FlowLayout layout = new FlowLayout(FlowLayout.LEFT, 0, 0);
setLayout(layout);
_jCheckBox = new JCheckBox();
_jCheckBox.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
isUpdatingModel = true;
getCheckBoxModel().setValue(((JCheckBox) e.getSource()).isSelected());
isUpdatingModel = false;
}
});
_jCheckBox.setFont(TEXTFIELD_FONT);
container = new JPanel(new FlowLayout(FlowLayout.CENTER, 4, 4));
container.setOpaque(false);
container.add(_jCheckBox);
add(container);
_jCheckBox.setEnabled(true);
_jCheckBox.setFocusable(false);
_jCheckBox.setOpaque(false);
if (getCheckBoxModel().getDescription() != null) {
_jCheckBox.setToolTipText(getCheckBoxModel().getDescription());
}
TransparentMouseListener tml = new TransparentMouseListener(_jCheckBox, this);
_jCheckBox.addMouseListener(tml);
_jCheckBox.addMouseMotionListener(tml);
_jCheckBox.setSelected(getCheckBoxModel().getValue());
_jCheckBox.setBackground(getBackgroundColor());
setBackground(getBackgroundColor());
revalidate();
}
/** Initializes the toolbar buttons */
protected void init() {
super.init();
markerButton.setEnabled(false);
quickFilterTextField.setMaximumSize(new Dimension(250, 20));
quickFilterTextField.setToolTipText("Quick filter");
regularExpressionCheckBox.setOpaque(false);
regularExpressionCheckBox.setToolTipText("Treat the filter text as a regular expression");
add(quickFilterTextField);
add(regularExpressionCheckBox);
addDividerButton();
add(debugButton);
add(infoButton);
add(warnButton);
add(errorButton);
add(fatalButton);
addDividerButton();
add(markerButton);
add(prevMarkedButton);
add(nextMarkedButton);
addDividerButton();
add(playButton);
add(deleteButton);
registerListeners();
}
/** @param driver Needed for the Replicator-specific options */
public PreferencesWindow(final MachineInterface machine) {
super("Preferences");
setResizable(true);
Image icon = Base.getImage("images/icon.gif", this);
setIconImage(icon);
JTabbedPane prefTabs = new JTabbedPane();
JPanel basic = new JPanel();
// Container content = this.getContentPane();
Container content = basic;
content.setLayout(new MigLayout("fill"));
content.add(new JLabel("MainWindow font size: "), "split");
fontSizeField = new JFormattedTextField(Base.getLocalFormat());
fontSizeField.setColumns(4);
content.add(fontSizeField);
content.add(new JLabel(" (requires restart of ReplicatorG)"), "wrap");
boolean checkTempDuringBuild = Base.preferences.getBoolean("build.monitor_temp", true);
boolean displaySpeedWarning = Base.preferences.getBoolean("build.speed_warning", true);
addCheckboxForPref(
content, "Monitor temperature during builds", "build.monitor_temp", checkTempDuringBuild);
addCheckboxForPref(
content, "Display Accelerated Speed Warnings", "build.speed_warning", displaySpeedWarning);
addCheckboxForPref(
content, "Automatically connect to machine at startup", "replicatorg.autoconnect", true);
addCheckboxForPref(
content, "Show experimental machine profiles", "machine.showExperimental", false);
addCheckboxForPref(
content,
"Review GCode for potential toolhead problems before building",
"build.safetyChecks",
true);
addCheckboxForPref(
content,
"Break Z motion into separate moves (normally false)",
"replicatorg.parser.breakzmoves",
false);
addCheckboxForPref(
content, "Show starfield in model preview window", "ui.show_starfield", false);
addCheckboxForPref(
content, "Notifications in System tray", "ui.preferSystemTrayNotifications", false);
addCheckboxForPref(
content,
"Automatically regenerate gcode when building from model view.",
"build.autoGenerateGcode",
true);
addCheckboxForPref(
content, "Use native avrdude for uploading code", "uploader.useNative", false);
JPanel advanced = new JPanel();
content = advanced;
content.setLayout(new MigLayout("fill"));
JButton modelColorButton;
modelColorButton = new JButton("Choose model color");
modelColorButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
// Note that this color is also defined in EditingModel.java
Color modelColor = new Color(Base.preferences.getInt("ui.modelColor", -19635));
modelColor = JColorChooser.showDialog(null, "Choose Model Color", modelColor);
if (modelColor == null) return;
Base.preferences.putInt("ui.modelColor", modelColor.getRGB());
Base.getEditor().refreshPreviewPanel();
}
});
modelColorButton.setVisible(true);
content.add(modelColorButton, "split");
JButton backgroundColorButton;
backgroundColorButton = new JButton("Choose background color");
backgroundColorButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
// Note that this color is also defined in EditingModel.java
Color backgroundColor = new Color(Base.preferences.getInt("ui.backgroundColor", 0));
backgroundColor =
JColorChooser.showDialog(null, "Choose Background Color", backgroundColor);
if (backgroundColor == null) return;
Base.preferences.putInt("ui.backgroundColor", backgroundColor.getRGB());
Base.getEditor().refreshPreviewPanel();
}
});
backgroundColorButton.setVisible(true);
content.add(backgroundColorButton, "wrap");
content.add(new JLabel("Firmware update URL: "), "split");
firmwareUpdateUrlField = new JTextField(34);
content.add(firmwareUpdateUrlField, "growx, wrap");
{
JLabel arcResolutionLabel = new JLabel("Arc resolution (in mm): ");
content.add(arcResolutionLabel, "split");
double value = Base.preferences.getDouble("replicatorg.parser.curve_segment_mm", 1.0);
JFormattedTextField arcResolutionField = new JFormattedTextField(Base.getLocalFormat());
arcResolutionField.setValue(new Double(value));
content.add(arcResolutionField);
String arcResolutionHelp =
"<html><small><em>"
+ "The arc resolution is the default segment length that the gcode parser will break arc codes <br>"
+ "like G2 and G3 into. Drivers that natively handle arcs will ignore this setting."
+ "</em></small></html>";
arcResolutionField.setToolTipText(arcResolutionHelp);
arcResolutionLabel.setToolTipText(arcResolutionHelp);
// content.add(new JLabel(arcResolutionHelp),"growx,wrap");
arcResolutionField.setColumns(10);
arcResolutionField.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
if (evt.getPropertyName() == "value") {
try {
Double v = (Double) evt.getNewValue();
if (v == null) return;
Base.preferences.putDouble(
"replicatorg.parser.curve_segment_mm", v.doubleValue());
} catch (ClassCastException cce) {
Base.logger.warning(
"Unexpected value type: " + evt.getNewValue().getClass().toString());
}
}
}
});
}
{
JLabel sfTimeoutLabel = new JLabel("Skeinforge timeout: ");
content.add(sfTimeoutLabel, "split, gap unrelated");
int value = Base.preferences.getInt("replicatorg.skeinforge.timeout", -1);
JFormattedTextField sfTimeoutField = new JFormattedTextField(Base.getLocalFormat());
sfTimeoutField.setValue(new Integer(value));
content.add(sfTimeoutField, "wrap 10px, growx");
String sfTimeoutHelp =
"<html><small><em>"
+ "The Skeinforge timeout is the number of seconds that replicatorg will wait while the<br>"
+ "Skeinforge preferences window is open. If you find that RepG freezes after editing profiles<br>"
+ "you can set this number greater than -1 (-1 means no timeout)."
+ "</em></small></html>";
sfTimeoutField.setToolTipText(sfTimeoutHelp);
sfTimeoutLabel.setToolTipText(sfTimeoutHelp);
// content.add(new JLabel(sfTimeoutHelp),"growx,wrap");
sfTimeoutField.setColumns(10);
sfTimeoutField.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
if (evt.getPropertyName() == "value") {
try {
Integer v = ((Number) evt.getNewValue()).intValue();
if (v == null) return;
Base.preferences.putInt("replicatorg.skeinforge.timeout", v.intValue());
} catch (ClassCastException cce) {
Base.logger.warning(
"Unexpected value type: " + evt.getNewValue().getClass().toString());
}
}
}
});
}
{
content.add(new JLabel("Debugging level (default INFO):"), "split");
content.add(makeDebugLevelDropdown(), "wrap");
final JCheckBox logCb = new JCheckBox("Log to file");
logCb.setSelected(Base.preferences.getBoolean("replicatorg.useLogFile", false));
content.add(logCb, "split");
logCb.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
Base.preferences.putBoolean("replicatorg.useLogFile", logCb.isSelected());
}
});
final JLabel logPathLabel = new JLabel("Log file name: ");
content.add(logPathLabel, "split");
logPathField = new JTextField(34);
content.add(logPathField, "growx, wrap 10px");
logPathField.setEnabled(logCb.isSelected());
logPathLabel.setEnabled(logCb.isSelected());
logCb.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
JCheckBox box = (JCheckBox) e.getSource();
logPathField.setEnabled(box.isSelected());
logPathLabel.setEnabled(box.isSelected());
}
});
}
{
final int defaultTemp = 75;
final String tooltipGeneral =
"When enabled, starting all builds heats components to this temperature";
final String tooltipHead = "Set preheat temperature for the specified toolhead";
final String tooltipPlatform = "Set preheat temperature for the build platfom";
final JCheckBox preheatCb = new JCheckBox("Preheat builds");
preheatCb.setToolTipText(tooltipGeneral);
content.add(preheatCb, "split");
preheatCb.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent arg0) {
Base.preferences.putBoolean("build.doPreheat", preheatCb.isSelected());
}
});
preheatCb.setSelected(Base.preferences.getBoolean("build.doPreheat", false));
final JLabel t0Label = new JLabel("Toolhead Right: ");
final JLabel t1Label = new JLabel("Toolhead Left: ");
final JLabel pLabel = new JLabel("Platform: ");
Integer t0Value = Base.preferences.getInt("build.preheatTool0", defaultTemp);
Integer t1Value = Base.preferences.getInt("build.preheatTool1", defaultTemp);
Integer pValue = Base.preferences.getInt("build.preheatPlatform", defaultTemp);
final JFormattedTextField t0Field = new JFormattedTextField(Base.getLocalFormat());
final JFormattedTextField t1Field = new JFormattedTextField(Base.getLocalFormat());
final JFormattedTextField pField = new JFormattedTextField(Base.getLocalFormat());
t0Field.setToolTipText(tooltipHead);
t0Label.setToolTipText(tooltipHead);
t1Field.setToolTipText(tooltipHead);
t1Label.setToolTipText(tooltipHead);
pField.setToolTipText(tooltipPlatform);
pLabel.setToolTipText(tooltipPlatform);
t0Field.setValue(t0Value);
t1Field.setValue(t1Value);
pField.setValue(pValue);
// let's avoid creating too many Anon. inner Listeners, also is fewer lines (and just as
// clear)!
PropertyChangeListener p =
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
if (evt.getPropertyName() == "value") {
double target;
if (evt.getSource() == t0Field) {
target = ((Number) t0Field.getValue()).doubleValue();
target = confirmTemperature(target, "temperature.acceptedLimit", 200.0);
if (target == Double.MIN_VALUE) {
t0Field.setValue(Base.preferences.getInt("build.preheatTool0", defaultTemp));
return;
}
Base.preferences.putInt("build.preheatTool0", (int) target);
} else if (evt.getSource() == t1Field) {
target = ((Number) t1Field.getValue()).doubleValue();
target = confirmTemperature(target, "temperature.acceptedLimit", 200.0);
if (target == Double.MIN_VALUE) {
t0Field.setValue(Base.preferences.getInt("build.preheatTool1", defaultTemp));
return;
}
Base.preferences.putInt("build.preheatTool1", (int) target);
} else if (evt.getSource() == pField) {
target = ((Number) pField.getValue()).doubleValue();
target = confirmTemperature(target, "temperature.acceptedLimit.bed", 110.0);
if (target == Double.MIN_VALUE) {
t0Field.setValue(Base.preferences.getInt("build.preheatPlatform", defaultTemp));
return;
}
Base.preferences.putInt("build.preheatPlatform", (int) target);
}
}
}
};
t0Field.addPropertyChangeListener(p);
t1Field.addPropertyChangeListener(p);
pField.addPropertyChangeListener(p);
content.add(t0Label, "split, gap 20px");
content.add(t0Field, "split, growx");
content.add(t1Label, "split, gap unrelated");
content.add(t1Field, "split, growx");
content.add(pLabel, "split, gap unrelated");
content.add(pField, "split, growx, wrap 10px");
}
{
JButton b = new JButton("Select Python interpreter...");
content.add(b, "spanx,wrap 10px");
b.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
SwingPythonSelector sps = new SwingPythonSelector(PreferencesWindow.this);
String path = sps.selectFreeformPath();
if (path != null) {
PythonUtils.setPythonPath(path);
}
}
});
}
addInitialFilePrefs(content);
prefTabs.add(basic, "Basic");
prefTabs.add(advanced, "Advanced");
content = getContentPane();
content.setLayout(new MigLayout());
content.add(prefTabs, "wrap");
JButton allPrefs = new JButton("View Preferences Table");
content.add(allPrefs, "split");
allPrefs.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
JFrame advancedPrefs = new AdvancedPrefs();
advancedPrefs.setVisible(true);
}
});
// Also available as a menu item in the main gui.
JButton delPrefs = new JButton("Reset all preferences");
content.add(delPrefs);
delPrefs.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent evt) {
editor.resetPreferences();
}
});
JButton button;
button = new JButton("Close");
button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
applyFrame();
dispose();
}
});
content.add(button, "tag ok");
showCurrentSettings();
// closing the window is same as hitting cancel button
addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent e) {
dispose();
}
});
ActionListener disposer =
new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
dispose();
}
};
Base.registerWindowCloseKeys(getRootPane(), disposer);
pack();
Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
setLocation((screen.width - getWidth()) / 2, (screen.height - getHeight()) / 2);
// handle window closing commands for ctrl/cmd-W or hitting ESC.
getContentPane()
.addKeyListener(
new KeyAdapter() {
public void keyPressed(KeyEvent e) {
KeyStroke wc = MainWindow.WINDOW_CLOSE_KEYSTROKE;
if ((e.getKeyCode() == KeyEvent.VK_ESCAPE)
|| (KeyStroke.getKeyStrokeForEvent(e).equals(wc))) {
dispose();
}
}
});
}
private void jbInit() throws Exception {
titledBorder1 =
new TitledBorder(
BorderFactory.createEtchedBorder(Color.white, new Color(148, 145, 140)),
appContext.getI18nString("snappingSnapOptions"));
border2 = BorderFactory.createEtchedBorder(Color.white, new Color(148, 145, 140));
titledBorder2 = new TitledBorder(border2, appContext.getI18nString("gridSnapOptions"));
this.setLayout(borderLayout1);
jPanel1.setLayout(gridBagLayout1);
jPanel2.setLayout(gridBagLayout2);
jPanel2.setBorder(titledBorder1);
snapToFeaturesCheckBox.setText(appContext.getI18nString("snapLinesSnapOptions"));
snapToVerticesCheckBox.setText(appContext.getI18nString("snapVertivesSnapOptions"));
snapToGridCheckBox.setText(appContext.getI18nString("snapGridSnapOptions"));
jPanel4.setLayout(gridBagLayout3);
jPanel5.setBorder(titledBorder2);
jPanel5.setLayout(gridBagLayout4);
gridSizeTextField.setText("20");
gridSizeTextField.setHorizontalAlignment(SwingConstants.TRAILING);
jPanel7.setLayout(gridBagLayout6);
showGridDotsRadioButton.setSelected(true);
showGridDotsRadioButton.setText(appContext.getI18nString("snapDotsSnapOptions"));
showGridLinesRadioButton.setText(appContext.getI18nString("snapLinesSnapOptions"));
showGridCheckBox.setToolTipText("");
showGridCheckBox.setText(appContext.getI18nString("snapSizeSnapOptions"));
showGridCheckBox.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(ActionEvent e) {
showGridCheckBox_actionPerformed(e);
}
});
tolerancePanel.setLayout(gridBagLayout5);
toleranceLabel.setText(appContext.getI18nString("toleranceSnapOptions"));
toleranceUnitsLabel.setText(appContext.getI18nString("unitsSnapOptions"));
showGridUnitsLabel.setText(appContext.getI18nString("unitsModelSnapOptions"));
this.add(jPanel1, BorderLayout.CENTER);
jPanel1.add(
jPanel2,
new GridBagConstraints(
0,
0,
1,
1,
1.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(10, 10, 10, 10),
0,
0));
jPanel2.add(
snapToFeaturesCheckBox,
new GridBagConstraints(
0,
2,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel2.add(
snapToVerticesCheckBox,
new GridBagConstraints(
0,
1,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel2.add(
jPanel3,
new GridBagConstraints(
1,
1,
1,
1,
1.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(0, 0, 0, 0),
0,
0));
jPanel2.add(
jPanel4,
new GridBagConstraints(
0,
3,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel4.add(
snapToGridCheckBox,
new GridBagConstraints(
0,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel2.add(
tolerancePanel,
new GridBagConstraints(
0,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
tolerancePanel.add(
toleranceLabel,
new GridBagConstraints(
1,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 5),
0,
0));
tolerancePanel.add(
toleranceTextField,
new GridBagConstraints(
2,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 5),
0,
0));
tolerancePanel.add(
toleranceUnitsLabel,
new GridBagConstraints(
3,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel1.add(
jPanel5,
new GridBagConstraints(
0,
1,
1,
1,
1.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(0, 10, 10, 10),
0,
0));
jPanel5.add(
jPanel7,
new GridBagConstraints(
0,
1,
1,
1,
1.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel7.add(
gridSizeTextField,
new GridBagConstraints(
1,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 5),
0,
0));
jPanel7.add(
showGridCheckBox,
new GridBagConstraints(
0,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel5.add(
showGridDotsRadioButton,
new GridBagConstraints(
0,
2,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel5.add(
showGridLinesRadioButton,
new GridBagConstraints(
0,
3,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
jPanel1.add(
jPanel6,
new GridBagConstraints(
0,
2,
1,
1,
0.0,
1.0,
GridBagConstraints.CENTER,
GridBagConstraints.VERTICAL,
new Insets(0, 0, 0, 0),
0,
0));
jPanel7.add(
showGridUnitsLabel,
new GridBagConstraints(
2,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
}
public void mouseEntered(MouseEvent arg0) {
manual.setToolTipText("Check to enable temporary manual mode.");
}
/** Initializes and binds the components related to modeling codon positions. */
private void initCodonPartitionComponents() {
PanelUtils.setupComponent(substUnlinkCheck);
substUnlinkCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setUnlinkedSubstitutionModel(substUnlinkCheck.isSelected());
}
});
substUnlinkCheck.setEnabled(false);
substUnlinkCheck.setToolTipText(
""
+ "<html>Gives each codon position partition different<br>"
+ "substitution model parameters.</html>");
PanelUtils.setupComponent(heteroUnlinkCheck);
heteroUnlinkCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setUnlinkedHeterogeneityModel(heteroUnlinkCheck.isSelected());
}
});
heteroUnlinkCheck.setEnabled(heteroCombo.getSelectedIndex() != 0);
heteroUnlinkCheck.setToolTipText(
"<html>Gives each codon position partition different<br>rate heterogeneity model parameters.</html>");
PanelUtils.setupComponent(freqsUnlinkCheck);
freqsUnlinkCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setUnlinkedFrequencyModel(freqsUnlinkCheck.isSelected());
}
});
freqsUnlinkCheck.setEnabled(false);
freqsUnlinkCheck.setToolTipText(
"<html>Gives each codon position partition different<br>nucleotide frequency parameters.</html>");
PanelUtils.setupComponent(codingCombo);
codingCombo.setToolTipText("<html>Select how to partition the codon positions.</html>");
codingCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
switch (codingCombo.getSelectedIndex()) {
case 0:
model.setCodonHeteroPattern(null);
break;
case 1:
model.setCodonHeteroPattern("112");
break;
default:
model.setCodonHeteroPattern("123");
break;
}
if (codingCombo.getSelectedIndex() != 0) {
// codon position partitioning
substUnlinkCheck.setEnabled(true);
heteroUnlinkCheck.setEnabled(heteroCombo.getSelectedIndex() != 3);
freqsUnlinkCheck.setEnabled(true);
substUnlinkCheck.setSelected(true);
heteroUnlinkCheck.setSelected(heteroCombo.getSelectedIndex() != 0);
freqsUnlinkCheck.setSelected(true);
} else {
substUnlinkCheck.setEnabled(false);
substUnlinkCheck.setSelected(false);
heteroUnlinkCheck.setEnabled(false);
heteroUnlinkCheck.setSelected(false);
freqsUnlinkCheck.setEnabled(false);
freqsUnlinkCheck.setSelected(false);
}
}
});
}
public PartitionModelPanel(final PartitionSubstitutionModel partitionModel) {
super(12, (OSType.isMac() ? 6 : 24));
this.model = partitionModel;
initCodonPartitionComponents();
PanelUtils.setupComponent(nucSubstCombo);
nucSubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setNucSubstitutionModel((NucModelType) nucSubstCombo.getSelectedItem());
}
});
nucSubstCombo.setToolTipText("<html>Select the type of nucleotide substitution model.</html>");
PanelUtils.setupComponent(aaSubstCombo);
aaSubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
AminoAcidModelType type = (AminoAcidModelType) aaSubstCombo.getSelectedItem();
model.setAaSubstitutionModel(type);
citationText.setText(type.getCitation().toString());
}
});
aaSubstCombo.setToolTipText("<html>Select the type of amino acid substitution model.</html>");
PanelUtils.setupComponent(binarySubstCombo);
binarySubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setBinarySubstitutionModel((BinaryModelType) binarySubstCombo.getSelectedItem());
useAmbiguitiesTreeLikelihoodCheck.setSelected(
binarySubstCombo.getSelectedItem() == BinaryModelType.BIN_COVARION);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(
binarySubstCombo.getSelectedItem() != BinaryModelType.BIN_COVARION);
}
});
binarySubstCombo.setToolTipText("<html>Select the type of binary substitution model.</html>");
PanelUtils.setupComponent(useAmbiguitiesTreeLikelihoodCheck);
useAmbiguitiesTreeLikelihoodCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setUseAmbiguitiesTreeLikelihood(useAmbiguitiesTreeLikelihoodCheck.isSelected());
}
});
useAmbiguitiesTreeLikelihoodCheck.setToolTipText(
"<html>Detemine useAmbiguities in < treeLikelihood > .</html>");
PanelUtils.setupComponent(frequencyCombo);
frequencyCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setFrequencyPolicy((FrequencyPolicyType) frequencyCombo.getSelectedItem());
}
});
frequencyCombo.setToolTipText(
"<html>Select the policy for determining the base frequencies.</html>");
PanelUtils.setupComponent(heteroCombo);
heteroCombo.setToolTipText(
"<html>Select the type of site-specific rate<br>heterogeneity model.</html>");
heteroCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
boolean gammaHetero =
heteroCombo.getSelectedIndex() == 1 || heteroCombo.getSelectedIndex() == 3;
model.setGammaHetero(gammaHetero);
model.setInvarHetero(
heteroCombo.getSelectedIndex() == 2 || heteroCombo.getSelectedIndex() == 3);
if (gammaHetero) {
gammaCatLabel.setEnabled(true);
gammaCatCombo.setEnabled(true);
} else {
gammaCatLabel.setEnabled(false);
gammaCatCombo.setEnabled(false);
}
if (codingCombo.getSelectedIndex() != 0) {
heteroUnlinkCheck.setEnabled(heteroCombo.getSelectedIndex() != 0);
heteroUnlinkCheck.setSelected(heteroCombo.getSelectedIndex() != 0);
}
}
});
PanelUtils.setupComponent(gammaCatCombo);
gammaCatCombo.setToolTipText(
"<html>Select the number of categories to use for<br>the discrete gamma rate heterogeneity model.</html>");
gammaCatCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setGammaCategories(gammaCatCombo.getSelectedIndex() + 4);
}
});
setYang96Button = new JButton("Use Yang96 model");
setYang96Button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ev) {
setYang96Model();
}
});
PanelUtils.setupComponent(setYang96Button);
setYang96Button.setToolTipText(
"<html>Sets a 3 codon-position model with independent GTR and Gamma as described in<br>"
+ "Yang (1996) <i>J Mol Evol</i> <b>42</b>: 587–596. This model is named 3' in this paper.</html>");
setSRD06Button = new JButton("Use SRD06 model");
setSRD06Button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ev) {
setSRD06Model();
}
});
PanelUtils.setupComponent(setSRD06Button);
setSRD06Button.setToolTipText(
"<html>Sets the SRD06 model as described in<br>"
+ "Shapiro, Rambaut & Drummond (2006) <i>MBE</i> <b>23</b>: 7-9.</html>");
citationText = new JTextArea(1, 40);
citationText.setLineWrap(true);
citationText.setWrapStyleWord(true);
citationText.setEditable(false);
citationText.setFont(this.getFont());
citationText.setOpaque(false);
AminoAcidModelType type = (AminoAcidModelType) aaSubstCombo.getSelectedItem();
citationText.setText(type.getCitation().toString());
dolloCheck.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
if (dolloCheck.isSelected()) {
binarySubstCombo.setSelectedIndex(0);
binarySubstCombo.setEnabled(false);
useAmbiguitiesTreeLikelihoodCheck.setSelected(true);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(false);
frequencyCombo.setEnabled(false);
frequencyCombo.setSelectedItem(FrequencyPolicyType.EMPIRICAL);
heteroCombo.setSelectedIndex(0);
heteroCombo.setEnabled(false);
model.setBinarySubstitutionModel(BinaryModelType.BIN_DOLLO);
model.setDolloModel(true);
DolloComponentOptions comp =
(DolloComponentOptions)
model.getOptions().getComponentOptions(DolloComponentOptions.class);
comp.createParameters(model.getOptions());
comp.setActive(true);
} else {
binarySubstCombo.setEnabled(true);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(true);
frequencyCombo.setEnabled(true);
heteroCombo.setEnabled(true);
model.setBinarySubstitutionModel(
(BinaryModelType) binarySubstCombo.getSelectedItem());
model.setDolloModel(false);
}
}
});
PanelUtils.setupComponent(dolloCheck);
// dolloCheck.addChangeListener(new ChangeListener() {
// public void stateChanged(ChangeEvent e) {
// model.setDolloModel(true);
// }
// });
dolloCheck.setEnabled(true);
dolloCheck.setToolTipText(
"<html>Activates a Stochastic Dollo model as described in<br>"
+ "Alekseyenko, Lee & Suchard (2008) <i>Syst Biol</i> <b>57</b>: 772-784.</html>");
PanelUtils.setupComponent(discreteTraitSiteModelCombo);
discreteTraitSiteModelCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setDiscreteSubstType(
(DiscreteSubstModelType) discreteTraitSiteModelCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(continuousTraitSiteModelCombo);
continuousTraitSiteModelCombo.setToolTipText(
"<html>Select the model of continuous random walk, either homogenous<br>"
+ "or relaxed random walk (RRW) with a choice of distributions.</html>");
continuousTraitSiteModelCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setContinuousSubstModelType(
(ContinuousSubstModelType) continuousTraitSiteModelCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(latLongCheck);
latLongCheck.setToolTipText(
"<html>Specify whether this is a geographical trait representing <br>"
+ "latitude and longitude. Provides appropriate statistics to log file.</html>");
latLongCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setIsLatitudeLongitude(latLongCheck.isSelected());
}
});
latLongCheck.setEnabled(false);
PanelUtils.setupComponent(useLambdaCheck);
useLambdaCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
ContinuousComponentOptions component =
(ContinuousComponentOptions)
model.getOptions().getComponentOptions(ContinuousComponentOptions.class);
component.setUseLambda(model, useLambdaCheck.isSelected());
}
});
useLambdaCheck.setToolTipText(
"<html>Estimate degree of phylogenetic correlation in continuous traits using <br>"
+ "a tree transform. Inspired by Pagel (1999), described in Lemey et al (2013) <i>in prep</i></html>");
PanelUtils.setupComponent(activateBSSVS);
activateBSSVS.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setActivateBSSVS(activateBSSVS.isSelected());
}
});
activateBSSVS.setToolTipText(
"<html>Activates Bayesian stochastic search variable selection on the rates as described in<br>"
+ "Lemey, Rambaut, Drummond & Suchard (2009) <i>PLoS Computational Biology</i> <b>5</b>: e1000520</html>");
// ============ micro-sat ================
microsatName.setColumns(30);
microsatName.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setName(microsatName.getText());
}
});
microsatMax.setColumns(10);
microsatMax.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setMax(Integer.parseInt(microsatMax.getText()));
}
});
microsatMin.setColumns(10);
microsatMin.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setMin(Integer.parseInt(microsatMin.getText()));
}
});
PanelUtils.setupComponent(shareMicroSatCheck);
shareMicroSatCheck.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
model.getOptions().shareMicroSat = shareMicroSatCheck.isSelected();
if (shareMicroSatCheck.isSelected()) {
model.getOptions().shareMicroSat();
} else {
model.getOptions().unshareMicroSat();
}
setOptions();
}
});
PanelUtils.setupComponent(rateProportionCombo);
rateProportionCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setRatePorportion(
(MicroSatModelType.RateProportionality) rateProportionCombo.getSelectedItem());
}
});
// rateProportionCombo.setToolTipText("<html>Select the type of microsatellite substitution
// model.</html>");
PanelUtils.setupComponent(mutationBiasCombo);
mutationBiasCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setMutationBias(
(MicroSatModelType.MutationalBias) mutationBiasCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(phaseCombo);
phaseCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setPhase((MicroSatModelType.Phase) phaseCombo.getSelectedItem());
}
});
setupPanel();
setOpaque(false);
}
/**
* Constructor
*
* @param s
*/
public LayersPanel(State s) {
super("Layers");
state = s;
setLayout(new BorderLayout());
Landscape landscape = Landscape.getInstance();
LayerInfo[] currentSelection = landscape.getLayerManager().getLayerSelection();
JPanel topPanel = new JPanel(new FlowLayout());
showLayersCheckBox = new JCheckBox("Show Layers");
showLayersCheckBox.setToolTipText("display the visible layers");
showLayersCheckBox.setSelected(landscape.isLayersEnabled());
showLayersCheckBox.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent event) {
Landscape.getInstance().enableLayers(showLayersCheckBox.isSelected());
}
});
topPanel.add(showLayersCheckBox);
configureButton = new JButton("Change Configuration");
configureButton.setToolTipText("add and remove visible layers");
configureButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent event) {
LayerConfigurationDialog dialog =
new LayerConfigurationDialog((Dialog) state.getViewData().getViewWindow());
dialog.open();
LayerInfo[] current = (LayerInfo[]) dialog.getResult();
if (current != null) {
Landscape.getInstance().getLayerManager().setLayerSelection(current);
adjustBlendFactors(1, -1);
for (int i = 0; i < current.length; ++i) {
fillLayerSelection(i, current[i]);
}
Landscape.getInstance().resetLayers();
}
}
});
topPanel.add(configureButton);
distributeButton = new JButton("Distribute");
distributeButton.setToolTipText(
"distribute total color contribution equally among unlocked layers");
distributeButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent event) {
adjustBlendFactors(1, -1);
Landscape.getInstance().markDirty(DirtyType.RenderState);
}
});
topPanel.add(distributeButton);
add(topPanel, BorderLayout.NORTH);
// create the layer selections
JPanel panel = new JPanel();
panel.setLayout(new GridLayout(LayerManager.NUM_LAYERS, 1, 0, 0));
layer = new JLabel[LayerManager.NUM_LAYERS];
blendFactorSpinner = new IntSpinner[LayerManager.NUM_LAYERS];
lockBox = new JCheckBox[LayerManager.NUM_LAYERS];
for (int i = 0; i < LayerManager.NUM_LAYERS; ++i) {
JPanel p = new JPanel();
p.setLayout(new FlowLayout(FlowLayout.LEFT));
p.add(new JLabel(" " + i + " "));
addLockBox(p, i);
addBlendFactorSpinner(p, i);
layer[i] = new JLabel();
p.add(layer[i]);
panel.add(p);
fillLayerSelection(i, currentSelection[i]);
}
add(new JScrollPane(panel), BorderLayout.CENTER);
}
/**
* Called when preparing this settings pane for display the first time. Can be overriden to
* implement the look of the settings pane.
*/
@Override
protected void prepareComponent() {
FormLayout layout =
new FormLayout(
"10dlu, right:d, 2dlu, d, 2dlu:grow", // columns
"p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p"); // rows
layout.setRowGroups(new int[][] {{3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23}});
setLayout(layout);
PanelBuilder builder = new PanelBuilder(layout, this);
CellConstraints cc = new CellConstraints();
builder.addSeparator(Localizer.getString("GeneralDownloadSettings"), cc.xywh(1, 1, 5, 1));
JLabel label =
builder.addLabel(
Localizer.getString("DownloadSettings_TotalParallelDownloads") + ": ", cc.xy(2, 3));
label.setToolTipText(Localizer.getString("DownloadSettings_TTTTotalParallelDownloads"));
totalWorkersTF =
new IntegerTextField(DownloadPrefs.MaxTotalDownloadWorker.get().toString(), 6, 2);
totalWorkersTF.setToolTipText(
Localizer.getString("DownloadSettings_TTTTotalParallelDownloads"));
builder.add(totalWorkersTF, cc.xy(4, 3));
label =
builder.addLabel(
Localizer.getString("DownloadSettings_ParallelDownloadsPerFile") + ": ", cc.xy(2, 5));
label.setToolTipText(Localizer.getString("DownloadSettings_TTTParallelDownloadsPerFile"));
workerPerDownloadTF =
new IntegerTextField(DownloadPrefs.MaxWorkerPerDownload.get().toString(), 6, 2);
workerPerDownloadTF.setToolTipText(
Localizer.getString("DownloadSettings_TTTParallelDownloadsPerFile"));
builder.add(workerPerDownloadTF, cc.xy(4, 5));
label =
builder.addLabel(
Localizer.getString("DownloadSettings_InitialSegmentSizeKb") + ": ", cc.xy(2, 7));
label.setToolTipText(Localizer.getString("DownloadSettings_TTTInitialSegmentSizeKb"));
initialSegmentSizeTF =
new IntegerTextField(
String.valueOf(DownloadPrefs.SegmentInitialSize.get().intValue() / 1024), 6, 4);
initialSegmentSizeTF.setToolTipText(
Localizer.getString("DownloadSettings_TTTInitialSegmentSizeKb"));
builder.add(initialSegmentSizeTF, cc.xy(4, 7));
label =
builder.addLabel(
Localizer.getString("DownloadSettings_SegmentTransferTimeSec") + ": ", cc.xy(2, 9));
label.setToolTipText(Localizer.getString("DownloadSettings_TTTSegmentTransferTimeSec"));
segmentTransferTimeTF =
new IntegerTextField(DownloadPrefs.SegmentTransferTargetTime.get().toString(), 6, 3);
segmentTransferTimeTF.setToolTipText(
Localizer.getString("DownloadSettings_TTTSegmentTransferTimeSec"));
builder.add(segmentTransferTimeTF, cc.xy(4, 9));
builder.addLabel(Localizer.getString("PushTimeout") + ": ", cc.xy(2, 11));
pushTimeoutTF =
new IntegerTextField(
String.valueOf(DownloadPrefs.PushRequestTimeout.get().intValue() / 1000), 6, 3);
builder.add(pushTimeoutTF, cc.xy(4, 11));
readoutMagmaChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_ReadoutDownloadedMagmas"),
DownloadPrefs.AutoReadoutMagmaFiles.get().booleanValue());
readoutMagmaChkbx.setToolTipText(
Localizer.getString("DownloadSettings_TTTReadoutDownloadedMagmas"));
builder.add(readoutMagmaChkbx, cc.xywh(2, 13, 4, 1));
readoutMetalinkChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_ReadoutDownloadedMetalink"),
DownloadPrefs.AutoReadoutMetalinkFiles.get().booleanValue());
readoutMetalinkChkbx.setToolTipText(
Localizer.getString("DownloadSettings_TTTReadoutDownloadedMetalink"));
builder.add(readoutMetalinkChkbx, cc.xywh(2, 15, 4, 1));
readoutRSSChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_ReadoutDownloadedRSS"),
DownloadPrefs.AutoReadoutRSSFiles.get().booleanValue());
readoutRSSChkbx.setToolTipText(Localizer.getString("DownloadSettings_TTTReadoutDownloadedRSS"));
builder.add(readoutRSSChkbx, cc.xywh(2, 17, 4, 1));
silentSubscriptionsChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_DownloadSubscriptionsSilently"),
SubscriptionPrefs.DownloadSilently.get().booleanValue());
silentSubscriptionsChkbx.setToolTipText(
Localizer.getString("DownloadSettings_TTTDownloadSubscriptionsSilently"));
builder.add(silentSubscriptionsChkbx, cc.xywh(2, 19, 4, 1));
removeCompletedDownloadsChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_AutoRemoveCompletedDownloads"),
DownloadPrefs.AutoRemoveCompleted.get().booleanValue());
removeCompletedDownloadsChkbx.setToolTipText(
Localizer.getString("DownloadSettings_TTTAutoRemoveCompletedDownloads"));
builder.add(removeCompletedDownloadsChkbx, cc.xywh(2, 21, 4, 1));
enableHitSnoopingChkbx =
new JCheckBox(
Localizer.getString("DownloadSettings_EnableHitSnooping"),
ConnectionPrefs.EnableQueryHitSnooping.get().booleanValue());
enableHitSnoopingChkbx.setToolTipText(
Localizer.getString("DownloadSettings_TTTEnableHitSnooping"));
builder.add(enableHitSnoopingChkbx, cc.xywh(2, 23, 4, 1));
initConfigValues();
refreshEnableState();
}
@Override
protected void init() {
super.init();
JavaRefactoringSettings settings = JavaRefactoringSettings.getInstance();
initReplaceFieldsWithGetters(settings);
myDeclareFinalCheckBox.setSelected(hasFinalModifier());
myDelegateViaOverloadingMethodCheckBox.setVisible(myInfo.getToSearchFor() != null);
setTitle(RefactoringBundle.message("introduce.parameter.title"));
myTable.init(myInfo);
final GrParameter[] parameters = myInfo.getToReplaceIn().getParameters();
toRemoveCBs.forEachEntry(
new TObjectIntProcedure<JCheckBox>() {
@Override
public boolean execute(JCheckBox checkbox, int index) {
checkbox.setSelected(true);
final GrParameter param = parameters[index];
final ParameterInfo pinfo = findParamByOldName(param.getName());
if (pinfo != null) {
pinfo.setPassAsParameter(false);
}
return true;
}
});
updateSignature();
if (myCanIntroduceSimpleParameter) {
mySignaturePanel.setVisible(false);
// action to hide signature panel if we have variants to introduce simple parameter
myTypeComboBox.addItemListener(
new ItemListener() {
@Override
public void itemStateChanged(ItemEvent e) {
mySignaturePanel.setVisible(myTypeComboBox.isClosureSelected());
pack();
}
});
}
final PsiType closureReturnType = inferClosureReturnType();
if (PsiType.VOID.equals(closureReturnType)) {
myForceReturnCheckBox.setEnabled(false);
myForceReturnCheckBox.setSelected(false);
} else {
myForceReturnCheckBox.setSelected(isForceReturn());
}
if (myInfo.getToReplaceIn() instanceof GrClosableBlock) {
myDelegateViaOverloadingMethodCheckBox.setEnabled(false);
myDelegateViaOverloadingMethodCheckBox.setToolTipText(
"Delegating is not allowed in closure context");
}
pack();
}