/**
* Check the database to find out whether any of a set of fields are used for any of the entries.
*
* @param database The bib database.
* @param fields The set of fields to look for.
* @return true if at least one of the given fields is set in at least one entry, false otherwise.
*/
private boolean linksFound(BibtexDatabase database, String[] fields) {
for (BibtexEntry entry : database.getEntries()) {
for (String field : fields) {
if (entry.getField(field) != null) {
return true;
}
}
}
return false;
}
public void setEntry(BibtexEntry entry) {
try {
updating = true;
Iterator<FieldEditor> i = editors.values().iterator();
while (i.hasNext()) {
FieldEditor editor = i.next();
Object content = entry.getField(editor.getFieldName());
String toSet = (content == null) ? "" : content.toString();
if (!toSet.equals(editor.getText())) editor.setText(toSet);
}
this.entry = entry;
} finally {
updating = false;
}
}
private void insertFields(String[] fields, BibtexEntry entry, XmlDocument xmlDocument) {
DocumentWrapper document = new DocumentWrapper(xmlDocument);
for (String field : fields) {
if (entry.getField(field) != null) {
continue;
}
if (field.equalsIgnoreCase("author")) {
entry.setField(field, document.getAuthors("and"));
}
if (field.equalsIgnoreCase("title")) {
entry.setField(field, document.getTitle());
}
if (field.equalsIgnoreCase("abstract")) {
entry.setField(field, document.getAbstract());
}
if (field.equalsIgnoreCase("keywords")) {
entry.setField(field, document.getKeyWords());
}
if (field.equalsIgnoreCase("doi")) {
entry.setField(field, document.getDoi());
}
if (field.equalsIgnoreCase("pages")) {
entry.setField(field, document.getPages());
}
if (field.equalsIgnoreCase("volume")) {
entry.setField(field, document.getVolume());
}
if (field.equalsIgnoreCase("number")) {
entry.setField(field, document.getNumber());
}
if (field.equalsIgnoreCase("year")) {
entry.setField(field, document.getYear());
}
if (field.equalsIgnoreCase("month")) {
entry.setField(field, document.getMonth());
}
if (field.equalsIgnoreCase("day")) {
entry.setField(field, document.getDay());
}
if (field.equalsIgnoreCase("booktitle")) {
entry.setField(field, document.getVenue());
}
if (field.equalsIgnoreCase("journal")) {
entry.setField(field, document.getVenue());
}
}
}
public void run() {
if (!goOn) return;
for (int i = 0; i < entries.length; i++) {
BibtexEntry entry = entries[i];
// Make a list of all PDFs linked from this entry:
List<File> files = new ArrayList<File>();
// First check the (legacy) "pdf" field:
String pdf = entry.getField("pdf");
String dir = panel.metaData().getFileDirectory("pdf");
File f = Util.expandFilename(pdf, new String[] {dir, "."});
if (f != null) files.add(f);
// Then check the "file" field:
dir = panel.metaData().getFileDirectory(GUIGlobals.FILE_FIELD);
String field = entry.getField(GUIGlobals.FILE_FIELD);
if (field != null) {
FileListTableModel tm = new FileListTableModel();
tm.setContent(field);
for (int j = 0; j < tm.getRowCount(); j++) {
FileListEntry flEntry = tm.getEntry(j);
if ((flEntry.getType() != null)
&& (flEntry.getType().getName().toLowerCase().equals("pdf"))) {
f = Util.expandFilename(flEntry.getLink(), new String[] {dir, "."});
if (f != null) files.add(f);
}
}
}
optDiag.progressArea.append(entry.getCiteKey() + "\n");
if (files.size() == 0) {
skipped++;
optDiag.progressArea.append(" " + Globals.lang("Skipped - No PDF linked") + ".\n");
} else
for (File file : files) {
if (!file.exists()) {
skipped++;
optDiag.progressArea.append(
" " + Globals.lang("Skipped - PDF does not exist") + ":\n");
optDiag.progressArea.append(" " + file.getPath() + "\n");
} else {
try {
XMPUtil.writeXMP(file, entry, database);
optDiag.progressArea.append(" " + Globals.lang("Ok") + ".\n");
entriesChanged++;
} catch (Exception e) {
optDiag.progressArea.append(
" " + Globals.lang("Error while writing") + " '" + file.getPath() + "':\n");
optDiag.progressArea.append(" " + e.getLocalizedMessage() + "\n");
errors++;
}
}
}
if (optDiag.canceled) {
optDiag.progressArea.append("\n" + Globals.lang("Operation canceled.\n"));
break;
}
}
optDiag.progressArea.append(
"\n"
+ Globals.lang(
"Finished writing XMP for %0 file (%1 skipped, %2 errors).",
String.valueOf(entriesChanged), String.valueOf(skipped), String.valueOf(errors)));
optDiag.done();
}
public RightClickMenu(BasePanel panel_, MetaData metaData_) {
panel = panel_;
metaData = metaData_;
// Are multiple entries selected?
boolean multiple = panel.mainTable.getSelectedRowCount() > 1;
// If only one entry is selected, get a reference to it for adapting the menu.
BibtexEntry be = null;
if (panel.mainTable.getSelectedRowCount() == 1) {
be = panel.mainTable.getSelected().get(0);
}
addPopupMenuListener(this);
add(
new AbstractAction(Globals.lang("Copy"), GUIGlobals.getImage("copy")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("copy");
} catch (Throwable ex) {
LOGGER.warn("Could not execute copy", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Paste"), GUIGlobals.getImage("paste")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("paste");
} catch (Throwable ex) {
LOGGER.warn("Could not execute paste", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Cut"), GUIGlobals.getImage("cut")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("cut");
} catch (Throwable ex) {
LOGGER.warn("Could not execute cut", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Delete"), GUIGlobals.getImage("delete")) {
@Override
public void actionPerformed(ActionEvent e) {
/*SwingUtilities.invokeLater(new Runnable () {
public void run() {*/
try {
panel.runCommand("delete");
} catch (Throwable ex) {
LOGGER.warn("Could not execute delete", ex);
}
/*}
}); */
}
});
addSeparator();
add(
new AbstractAction(Globals.lang("Export to clipboard")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("exportToClipboard");
} catch (Throwable ex) {
LOGGER.warn("Could not execute exportToClipboard", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Send as email")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("sendAsEmail");
} catch (Throwable ex) {
LOGGER.warn("Could not execute sendAsEmail", ex);
}
}
});
addSeparator();
JMenu markSpecific = JabRefFrame.subMenu("Mark specific color");
JabRefFrame frame = panel.frame;
for (int i = 0; i < EntryMarker.MAX_MARKING_LEVEL; i++) {
markSpecific.add(new MarkEntriesAction(frame, i).getMenuItem());
}
if (multiple) {
add(
new AbstractAction(Globals.lang("Mark entries"), GUIGlobals.getImage("markEntries")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("markEntries");
} catch (Throwable ex) {
LOGGER.warn("Could not execute markEntries", ex);
}
}
});
add(markSpecific);
add(
new AbstractAction(Globals.lang("Unmark entries"), GUIGlobals.getImage("unmarkEntries")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("unmarkEntries");
} catch (Throwable ex) {
LOGGER.warn("Could not execute unmarkEntries", ex);
}
}
});
addSeparator();
} else if (be != null) {
String marked = be.getField(BibtexFields.MARKED);
// We have to check for "" too as the marked field may be empty
if (marked == null || marked.isEmpty()) {
add(
new AbstractAction(Globals.lang("Mark entry"), GUIGlobals.getImage("markEntries")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("markEntries");
} catch (Throwable ex) {
LOGGER.warn("Could not execute markEntries", ex);
}
}
});
add(markSpecific);
} else {
add(markSpecific);
add(
new AbstractAction(Globals.lang("Unmark entry"), GUIGlobals.getImage("unmarkEntries")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("unmarkEntries");
} catch (Throwable ex) {
LOGGER.warn("Could not execute unmarkEntries", ex);
}
}
});
}
addSeparator();
}
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SPECIALFIELDSENABLED)) {
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_RANKING)) {
JMenu rankingMenu = new JMenu();
RightClickMenu.populateSpecialFieldMenu(rankingMenu, Rank.getInstance(), panel.frame);
add(rankingMenu);
}
// TODO: multiple handling for relevance and quality-assurance
// if multiple values are selected ("if (multiple)"), two options (set / clear) should be
// offered
// if one value is selected either set or clear should be offered
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_RELEVANCE)) {
add(Relevance.getInstance().getValues().get(0).getMenuAction(panel.frame));
}
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_QUALITY)) {
add(Quality.getInstance().getValues().get(0).getMenuAction(panel.frame));
}
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_PRINTED)) {
add(Printed.getInstance().getValues().get(0).getMenuAction(panel.frame));
}
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_PRIORITY)) {
JMenu priorityMenu = new JMenu();
RightClickMenu.populateSpecialFieldMenu(priorityMenu, Priority.getInstance(), panel.frame);
add(priorityMenu);
}
if (Globals.prefs.getBoolean(SpecialFieldsUtils.PREF_SHOWCOLUMN_READ)) {
JMenu readStatusMenu = new JMenu();
RightClickMenu.populateSpecialFieldMenu(
readStatusMenu, ReadStatus.getInstance(), panel.frame);
add(readStatusMenu);
}
addSeparator();
}
add(
new AbstractAction(Globals.lang("Open folder"), GUIGlobals.getImage("openFolder")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("openFolder");
} catch (Throwable ex) {
LOGGER.warn("Could not open folder", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Open file"), GUIGlobals.getImage("openExternalFile")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("openExternalFile");
} catch (Throwable ex) {
LOGGER.warn("Could not open external file", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Attach file"), GUIGlobals.getImage("open")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("addFileLink");
} catch (Throwable ex) {
LOGGER.warn("Could not attach file", ex);
}
}
});
/*add(new AbstractAction(Globals.lang("Open PDF or PS"), GUIGlobals.getImage("openFile")) {
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("openFile");
} catch (Throwable ex) {}
}
});*/
add(
new AbstractAction(Globals.lang("Open URL or DOI"), GUIGlobals.getImage("www")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("openUrl");
} catch (Throwable ex) {
LOGGER.warn("Could not execute open URL", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Copy BibTeX key")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("copyKey");
} catch (Throwable ex) {
LOGGER.warn("Could not copy BibTex key", ex);
}
}
});
add(
new AbstractAction(Globals.lang("Copy") + " \\cite{" + Globals.lang("BibTeX key") + '}') {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("copyCiteKey");
} catch (Throwable ex) {
LOGGER.warn("Could not copy cite key", ex);
}
}
});
addSeparator();
populateTypeMenu();
add(typeMenu);
add(
new AbstractAction(Globals.lang("Plain text import")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("importPlainText");
} catch (Throwable ex) {
LOGGER.debug("Could not import plain text", ex);
}
}
});
add(JabRef.jrf.massSetField);
add(JabRef.jrf.manageKeywords);
addSeparator(); // for "add/move/remove to/from group" entries (appended here)
groupAdd =
new JMenuItem(
new AbstractAction(Globals.lang("Add to group")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("addToGroup");
// BibtexEntry[] bes = panel.getSelectedEntries();
// JMenu groupMenu = buildGroupMenu(bes, true, false);
} catch (Throwable ex) {
LOGGER.debug("Could not add to group", ex);
}
}
});
add(groupAdd);
groupRemove =
new JMenuItem(
new AbstractAction(Globals.lang("Remove from group")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("removeFromGroup");
} catch (Throwable ex) {
LOGGER.debug("Could not remove from group", ex);
}
}
});
add(groupRemove);
JMenuItem groupMoveTo =
add(
new AbstractAction(Globals.lang("Move to group")) {
@Override
public void actionPerformed(ActionEvent e) {
try {
panel.runCommand("moveToGroup");
} catch (Throwable ex) {
LOGGER.debug("Could not execute move to group", ex);
}
}
});
add(groupMoveTo);
floatMarked.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
Globals.prefs.putBoolean(
JabRefPreferences.FLOAT_MARKED_ENTRIES, floatMarked.isSelected());
panel.mainTable.refreshSorting(); // Bad remote access
}
});
}