/** Expand the current node and return the list of leaves (MaterialVO objects). */
private ArrayList getComponents(DefaultMutableTreeNode node) {
ArrayList list = new ArrayList();
for (int i = 0; i < node.getChildCount(); i++)
list.addAll(getComponents((DefaultMutableTreeNode) node.getChildAt(i)));
if (node.isLeaf()) list.add(node.getUserObject());
return list;
}
public void addPhaseListener(PhaseListener listener) {
if (listener == null) throw new NullPointerException();
synchronized (_phaseList) {
_phaseList.add(listener);
_phaseListeners = new PhaseListener[_phaseList.size()];
_phaseList.toArray(_phaseListeners);
}
}
/** Gets all Genomic Data. */
private ProfileDataSummary getGenomicData(
String cancerStudyId,
HashMap<String, GeneticProfile> defaultGeneticProfileSet,
SampleList defaultSampleSet,
String geneListStr,
ArrayList<SampleList> sampleList,
HttpServletRequest request,
HttpServletResponse response)
throws IOException, ServletException, DaoException {
// parse geneList, written in the OncoPrintSpec language (except for changes by XSS clean)
double zScore =
ZScoreUtil.getZScore(
new HashSet<String>(defaultGeneticProfileSet.keySet()),
new ArrayList<GeneticProfile>(defaultGeneticProfileSet.values()),
request);
double rppaScore = ZScoreUtil.getRPPAScore(request);
ParserOutput theOncoPrintSpecParserOutput =
OncoPrintSpecificationDriver.callOncoPrintSpecParserDriver(
geneListStr,
new HashSet<String>(defaultGeneticProfileSet.keySet()),
new ArrayList<GeneticProfile>(defaultGeneticProfileSet.values()),
zScore,
rppaScore);
ArrayList<String> geneList = new ArrayList<String>();
geneList.addAll(theOncoPrintSpecParserOutput.getTheOncoPrintSpecification().listOfGenes());
ArrayList<ProfileData> profileDataList = new ArrayList<ProfileData>();
Set<String> warningUnion = new HashSet<String>();
for (GeneticProfile profile : defaultGeneticProfileSet.values()) {
try {
GetProfileData remoteCall =
new GetProfileData(
profile, geneList, StringUtils.join(defaultSampleSet.getSampleList(), " "));
ProfileData pData = remoteCall.getProfileData();
warningUnion.addAll(remoteCall.getWarnings());
profileDataList.add(pData);
} catch (IllegalArgumentException e) {
e.getStackTrace();
}
}
ProfileMerger merger = new ProfileMerger(profileDataList);
ProfileData mergedProfile = merger.getMergedProfile();
ProfileDataSummary dataSummary =
new ProfileDataSummary(
mergedProfile,
theOncoPrintSpecParserOutput.getTheOncoPrintSpecification(),
zScore,
rppaScore);
return dataSummary;
}
private void level2level3catalog(
RadarType radarType,
String pathInfo,
PrintWriter pw,
HttpServletRequest req,
HttpServletResponse res)
throws IOException {
try {
String type;
if (pathInfo.contains("level2")) type = radarType.toString() + "/level2";
else type = radarType.toString() + "/level3";
ByteArrayOutputStream os = new ByteArrayOutputStream(10000);
InvCatalogFactory factory = InvCatalogFactory.getDefaultFactory(false);
factory.writeXML(cat, os, true);
InvCatalogImpl tCat = factory.readXML(new ByteArrayInputStream(os.toByteArray()), catURI);
Iterator parents = tCat.getDatasets().iterator();
while (parents.hasNext()) {
ArrayList<InvDatasetImpl> delete = new ArrayList<InvDatasetImpl>();
InvDatasetImpl top = (InvDatasetImpl) parents.next();
Iterator tDatasets = top.getDatasets().iterator();
while (tDatasets.hasNext()) {
InvDatasetImpl ds = (InvDatasetImpl) tDatasets.next();
if (ds instanceof InvDatasetScan) {
InvDatasetScan ids = (InvDatasetScan) ds;
if (ids.getPath() == null) continue;
if (ids.getPath().contains(type)) {
ids.setXlinkHref(ids.getPath() + "/dataset.xml");
} else {
delete.add(ds);
}
}
}
// remove datasets
for (InvDatasetImpl idi : delete) {
top.removeDataset(idi);
}
}
if (pathInfo.endsWith("xml")) {
String catAsString = factory.writeXML(tCat);
pw.println(catAsString);
pw.flush();
} else {
HtmlWriter.getInstance().writeCatalog(req, res, tCat, true); // show catalog as HTML
}
} catch (Throwable e) {
log.error("RadarServer.level2level3catalog failed", e);
if (!res.isCommitted()) res.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
}
return;
}
static void returnOembed(HttpServletRequest request, HttpServletResponse response)
throws Exception {
String url = request.getParameter("url");
if (url == null) throw new Exception("No subject URL found.");
String retUrl = request.getParameter(S3Servlet.URL_PARAM);
if (retUrl == null && !S3Servlet.testing)
throw new Exception("Recieved no launch presentation return url");
Enumeration<String> en = request.getParameterNames();
ArrayList<String> keys = new ArrayList<String>(), vals = new ArrayList<String>();
String key, value;
while (en.hasMoreElements()) {
key = en.nextElement();
if ("action".equals(key)) continue;
if ("launch_presentation_return_url".equals(key)) continue;
if ("url".equals(key)) continue;
if ((value = request.getParameter(key)) != null) {
keys.add(key);
vals.add(value);
} // if//
} // while//
String endpoint =
S3Servlet.makeUrl(
S3Servlet.server + S3Servlet.prefix + "/" + S3Action.oembed,
keys.toArray(new String[keys.size()]),
vals.toArray(new String[vals.size()]));
String oembedUrl =
S3Servlet.makeUrl(
retUrl,
new String[] {"embed_type", "endpoint", "url"},
new String[] {"oembed", endpoint, url});
response.reset();
response.sendRedirect(oembedUrl);
} // returnOembed//
/** Business logic to execute. */
public final Response executeCommand(
Object inputPar,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
Connection conn = null;
try {
conn = ConnectionManager.getConnection(context);
// fires the GenericEvent.CONNECTION_CREATED event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.CONNECTION_CREATED,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
null));
String sql =
"select WAR04_WAREHOUSE_MOTIVES.QTY_SIGN,WAR04_WAREHOUSE_MOTIVES.ITEM_TYPE,WAR02_WAREHOUSE_MOVEMENTS.PROGRESSIVE,WAR02_WAREHOUSE_MOVEMENTS.COMPANY_CODE_SYS01,"
+ "WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_CODE_WAR01,WAR02_WAREHOUSE_MOVEMENTS.ITEM_CODE_ITM01,WAR02_WAREHOUSE_MOVEMENTS.PROGRESSIVE_HIE01,"
+ "SYS10_LOC.DESCRIPTION,WAR02_WAREHOUSE_MOVEMENTS.MOVEMENT_DATE,WAR02_WAREHOUSE_MOVEMENTS.USERNAME,WAR02_WAREHOUSE_MOVEMENTS.NOTE,"
+ "WAR02_WAREHOUSE_MOVEMENTS.DELTA_QTY,WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_MOTIVE_WAR04,SYS10_WAR04.DESCRIPTION,SYS10_ITM01.DESCRIPTION,"
+ "WAR01_WAREHOUSES.DESCRIPTION,"
+ "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM06,WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM11,"
+ "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM07,WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM12,"
+ "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM08,WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM13,"
+ "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM09,WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM14,"
+ "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM10,WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM15 "
+ " from "
+ "WAR04_WAREHOUSE_MOTIVES,WAR02_WAREHOUSE_MOVEMENTS,SYS10_TRANSLATIONS SYS10_LOC,SYS10_TRANSLATIONS SYS10_WAR04,"
+ "SYS10_TRANSLATIONS SYS10_ITM01,WAR01_WAREHOUSES,ITM01_ITEMS where "
+ "WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_MOTIVE_WAR04=WAR04_WAREHOUSE_MOTIVES.WAREHOUSE_MOTIVE and "
+ "WAR04_WAREHOUSE_MOTIVES.PROGRESSIVE_SYS10=SYS10_WAR04.PROGRESSIVE and "
+ "SYS10_WAR04.LANGUAGE_CODE=? and "
+ "WAR02_WAREHOUSE_MOVEMENTS.PROGRESSIVE_HIE01=SYS10_LOC.PROGRESSIVE and "
+ "SYS10_LOC.LANGUAGE_CODE=? and "
+ "WAR02_WAREHOUSE_MOVEMENTS.COMPANY_CODE_SYS01=ITM01_ITEMS.COMPANY_CODE_SYS01 and "
+ "WAR02_WAREHOUSE_MOVEMENTS.ITEM_CODE_ITM01=ITM01_ITEMS.ITEM_CODE and "
+ "ITM01_ITEMS.PROGRESSIVE_SYS10=SYS10_ITM01.PROGRESSIVE and "
+ "SYS10_ITM01.LANGUAGE_CODE=? and "
+ "WAR02_WAREHOUSE_MOVEMENTS.COMPANY_CODE_SYS01=WAR01_WAREHOUSES.COMPANY_CODE_SYS01 and "
+ "WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_CODE_WAR01=WAR01_WAREHOUSES.WAREHOUSE_CODE ";
Map attribute2dbField = new HashMap();
attribute2dbField.put("qtySignWAR04", "WAR04_WAREHOUSE_MOTIVES.QTY_SIGN");
attribute2dbField.put("itemTypeWAR04", "WAR04_WAREHOUSE_MOTIVES.ITEM_TYPE");
attribute2dbField.put("progressiveWAR02", "WAR02_WAREHOUSE_MOVEMENTS.PROGRESSIVE");
attribute2dbField.put(
"companyCodeSys01WAR02", "WAR02_WAREHOUSE_MOVEMENTS.COMPANY_CODE_SYS01");
attribute2dbField.put(
"warehouseCodeWar01WAR02", "WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_CODE_WAR01");
attribute2dbField.put("itemCodeItm01WAR02", "WAR02_WAREHOUSE_MOVEMENTS.ITEM_CODE_ITM01");
attribute2dbField.put("progressiveHie01WAR02", "WAR02_WAREHOUSE_MOVEMENTS.PROGRESSIVE_HIE01");
attribute2dbField.put("locationDescriptionSYS10", "SYS10_LOC.DESCRIPTION");
attribute2dbField.put("movementDateWAR02", "WAR02_WAREHOUSE_MOVEMENTS.MOVEMENT_DATE");
attribute2dbField.put("usernameWAR02", "WAR02_WAREHOUSE_MOVEMENTS.USERNAME");
attribute2dbField.put("noteWAR02", "WAR02_WAREHOUSE_MOVEMENTS.NOTE");
attribute2dbField.put("deltaQtyWAR02", "WAR02_WAREHOUSE_MOVEMENTS.DELTA_QTY");
attribute2dbField.put(
"warehouseMotiveWar04WAR02", "WAR02_WAREHOUSE_MOVEMENTS.WAREHOUSE_MOTIVE_WAR04");
attribute2dbField.put("motiveDescriptionSYS10", "SYS10_WAR04.DESCRIPTION");
attribute2dbField.put("itemDescriptionSYS10", "SYS10_ITM01.DESCRIPTION");
attribute2dbField.put("descriptionWAR01", "WAR01_WAREHOUSES.DESCRIPTION");
attribute2dbField.put(
"variantTypeItm06WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM06");
attribute2dbField.put(
"variantCodeItm11WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM11");
attribute2dbField.put(
"variantTypeItm07WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM07");
attribute2dbField.put(
"variantCodeItm12WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM12");
attribute2dbField.put(
"variantTypeItm08WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM08");
attribute2dbField.put(
"variantCodeItm13WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM13");
attribute2dbField.put(
"variantTypeItm09WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM09");
attribute2dbField.put(
"variantCodeItm14WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM14");
attribute2dbField.put(
"variantTypeItm10WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_TYPE_ITM10");
attribute2dbField.put(
"variantCodeItm15WAR02", "WAR02_WAREHOUSE_MOVEMENTS.VARIANT_CODE_ITM15");
ArrayList values = new ArrayList();
values.add(serverLanguageId);
values.add(serverLanguageId);
values.add(serverLanguageId);
GridParams gridParams = (GridParams) inputPar;
// read from WAR02 table...
Response answer =
QueryUtil.getQuery(
conn,
userSessionPars,
sql,
values,
attribute2dbField,
MovementVO.class,
"Y",
"N",
context,
gridParams,
true);
// fires the GenericEvent.BEFORE_COMMIT event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.BEFORE_COMMIT,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
answer));
return answer;
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"executeCommand",
"Error while fetching warehouse movements list",
ex);
return new ErrorResponse(ex.getMessage());
} finally {
try {
ConnectionManager.releaseConnection(conn, context);
} catch (Exception ex1) {
}
}
}
public void service(HttpServletRequest req, HttpServletResponse res)
throws ServletException, IOException {
res.setContentType("text/html");
PrintWriter out = res.getWriter();
Connection con = null;
String bnm[] = req.getParameterValues("Comics");
String qty[] = new String[bnm.length];
ArrayList al1 = new ArrayList();
ArrayList al2 = new ArrayList();
for (int i = 0; i < bnm.length; i++) {
qty[i] = req.getParameter(bnm[i]);
al1.add(bnm[i]);
al2.add(qty[i]);
}
HttpSession HSession = req.getSession(true);
ArrayList alo1 = (ArrayList) HSession.getValue("bNames");
ArrayList alo2 = (ArrayList) HSession.getValue("bQty");
al1.addAll(alo1);
al2.addAll(alo2);
HSession.putValue("bNames", al1);
HSession.putValue("bQty", al2);
out.println("<html>");
out.println("<title>Categories..</title>");
out.println("<body bgcolor=gold >");
out.println("<b><font face=\"Papyrus\" size=36 color= #806F7E><center>");
out.println("<big>Category</big></center>");
out.println("<ul type=disc>");
out.println("<font face=\"Maiandra GD\" color=black size=4>");
out.println("<li type=square>Choose your category..");
out.println("</li></font><br>");
out.println(
"<A href=\"FictionClick\"><font face=\"Mistral\" size=8 color=#208234><b>Fiction</b></A><br>");
out.println(
"<A href=\"NonFictionClick\"><font face=\"Mistral\" size=8 color=#208234><b>Non-Fiction</b></A><br>");
out.println(
"<A href=\"AutobiographyClick\"><font face=\"Mistral\" size=8 color=#208234><b>Autobiography</b></A><br>");
out.println(
"<A href=\"HistoryClick\"><font face=\"Mistral\" size=8 color=#208234><b>History</b></A><br>");
out.println(
"<A href=\"ComicsClick\"><font face=\"Mistral\" size=8 color=#208234><b>Comics</b></A></font><br><br>");
out.println("<center><form action=\"http://localhost:8080/servlet/FinalList\">");
out.println("<input type=submit value=\" Finalize List >>\"></form>");
out.println("<font face=\"Maiandra GD\" color=black size=4>");
out.println("Moves to final List..</center>");
out.println("</font></body>");
out.println("</html>");
} // service
/** Business logic to execute. */
public VOListResponse loadItemVariants(GridParams pars, String serverLanguageId, String username)
throws Throwable {
PreparedStatement pstmt = null;
Connection conn = null;
try {
if (this.conn == null) conn = getConn();
else conn = this.conn;
String tableName = (String) pars.getOtherGridParams().get(ApplicationConsts.TABLE_NAME);
ItemPK pk = (ItemPK) pars.getOtherGridParams().get(ApplicationConsts.ITEM_PK);
String productVariant = (String) productVariants.get(tableName);
String variantType = (String) variantTypes.get(tableName);
String variantTypeJoin = (String) variantTypeJoins.get(tableName);
String variantCodeJoin = (String) variantCodeJoins.get(tableName);
String sql =
"select "
+ tableName
+ "."
+ variantTypeJoin
+ ","
+ tableName
+ ".VARIANT_CODE,A.DESCRIPTION,B.DESCRIPTION, "
+ tableName
+ ".PROGRESSIVE_SYS10,"
+ variantType
+ ".PROGRESSIVE_SYS10 "
+ "from "
+ tableName
+ ","
+ variantType
+ ",SYS10_COMPANY_TRANSLATIONS A,SYS10_COMPANY_TRANSLATIONS B "
+ "where "
+ tableName
+ ".COMPANY_CODE_SYS01=? and "
+ tableName
+ ".COMPANY_CODE_SYS01="
+ variantType
+ ".COMPANY_CODE_SYS01 and "
+ tableName
+ "."
+ variantTypeJoin
+ "="
+ variantType
+ ".VARIANT_TYPE and "
+ tableName
+ ".COMPANY_CODE_SYS01=A.COMPANY_CODE_SYS01 and "
+ tableName
+ ".PROGRESSIVE_SYS10=A.PROGRESSIVE and A.LANGUAGE_CODE=? and "
+ variantType
+ ".COMPANY_CODE_SYS01=B.COMPANY_CODE_SYS01 and "
+ variantType
+ ".PROGRESSIVE_SYS10=B.PROGRESSIVE and B.LANGUAGE_CODE=? and "
+ tableName
+ ".ENABLED='Y' and "
+ variantType
+ ".ENABLED='Y' and "
+ // and not "+tableName+"."+variantTypeJoin+"=? and "+
"not "
+ tableName
+ ".VARIANT_CODE=? "
+ "order by "
+ tableName
+ "."
+ variantTypeJoin
+ ","
+ tableName
+ ".CODE_ORDER";
Map attribute2dbField = new HashMap();
attribute2dbField.put("variantType", tableName + "." + variantTypeJoin);
attribute2dbField.put("variantCode", tableName + ".VARIANT_CODE");
attribute2dbField.put("variantDesc", "A.DESCRIPTION");
attribute2dbField.put("variantTypeDesc", "B.DESCRIPTION");
attribute2dbField.put("variantProgressiveSys10", tableName + ".PROGRESSIVE_SYS10");
attribute2dbField.put("variantTypeProgressiveSys10", variantType + ".PROGRESSIVE_SYS10");
ArrayList values = new ArrayList();
values.add(pk.getCompanyCodeSys01ITM01());
values.add(serverLanguageId);
values.add(serverLanguageId);
// values.add(ApplicationConsts.JOLLY);
values.add(ApplicationConsts.JOLLY);
// read from ITMxxx table...
Response answer =
QueryUtil.getQuery(
conn,
new UserSessionParameters(username),
sql,
values,
attribute2dbField,
ItemVariantVO.class,
"Y",
"N",
null,
pars,
50,
true);
if (!answer.isError()) {
java.util.List vos = ((VOListResponse) answer).getRows();
HashMap map = new HashMap();
ItemVariantVO vo = null;
for (int i = 0; i < vos.size(); i++) {
vo = (ItemVariantVO) vos.get(i);
vo.setCompanyCodeSys01(pk.getCompanyCodeSys01ITM01());
vo.setItemCodeItm01(pk.getItemCodeITM01());
vo.setTableName(tableName);
map.put(vo.getVariantType() + "." + vo.getVariantCode(), vo);
}
pstmt =
conn.prepareStatement(
"select "
+ productVariant
+ "."
+ variantTypeJoin
+ ","
+ productVariant
+ "."
+ variantCodeJoin
+ " "
+ "from "
+ productVariant
+ " "
+ "where "
+ productVariant
+ ".COMPANY_CODE_SYS01=? and "
+ productVariant
+ ".ITEM_CODE_ITM01=? and "
+ productVariant
+ ".ENABLED='Y' ");
pstmt.setString(1, pk.getCompanyCodeSys01ITM01());
pstmt.setString(2, pk.getItemCodeITM01());
ResultSet rset = pstmt.executeQuery();
while (rset.next()) {
vo = (ItemVariantVO) map.get(rset.getString(1) + "." + rset.getString(2));
if (vo != null) vo.setSelected(Boolean.TRUE);
}
rset.close();
pstmt.close();
}
if (answer.isError()) throw new Exception(answer.getErrorMessage());
else return (VOListResponse) answer;
} catch (Throwable ex) {
Logger.error(
username,
this.getClass().getName(),
"getItemVariants",
"Error while fetching item variants list",
ex);
throw new Exception(ex.getMessage());
} finally {
try {
pstmt.close();
} catch (Exception ex2) {
}
try {
if (this.conn == null && conn != null) {
// close only local connection
conn.commit();
conn.close();
}
} catch (Exception exx) {
}
}
}
/** Business logic to execute. */
public final Response executeCommand(
Object inputPar,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
Connection conn = null;
PreparedStatement pstmt = null;
try {
conn = ConnectionManager.getConnection(context);
// fires the GenericEvent.CONNECTION_CREATED event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.CONNECTION_CREATED,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
null));
// retrieve companies list...
GridParams gridParams = (GridParams) inputPar;
String companies =
(String)
gridParams
.getOtherGridParams()
.get(ApplicationConsts.COMPANY_CODE_SYS01); // used in lookup grid...
if (companies == null) {
ArrayList companiesList =
((JAIOUserSessionParameters) userSessionPars).getCompanyBa().getCompaniesList("SAL06");
companies = "";
for (int i = 0; i < companiesList.size(); i++)
companies += "'" + companiesList.get(i).toString() + "',";
companies = companies.substring(0, companies.length() - 1);
} else companies = "'" + companies + "'";
String sql =
"select SAL06_CHARGES.COMPANY_CODE_SYS01,SAL06_CHARGES.CHARGE_CODE,SAL06_CHARGES.PROGRESSIVE_SYS10,"
+ "SYS10_TRANSLATIONS.DESCRIPTION,SAL06_CHARGES.VALUE,SAL06_CHARGES.PERC,SAL06_CHARGES.VAT_CODE_REG01,"
+ "SAL06_CHARGES.CURRENCY_CODE_REG03,SAL06_CHARGES.ENABLED"
+ " from SAL06_CHARGES,SYS10_TRANSLATIONS where "
+ "SAL06_CHARGES.PROGRESSIVE_SYS10=SYS10_TRANSLATIONS.PROGRESSIVE and "
+ "SYS10_TRANSLATIONS.LANGUAGE_CODE=? and "
+ "SAL06_CHARGES.ENABLED='Y' and "
+ "SAL06_CHARGES.COMPANY_CODE_SYS01 in ("
+ companies
+ ")";
Map attribute2dbField = new HashMap();
attribute2dbField.put("companyCodeSys01SAL06", "SAL06_CHARGES.COMPANY_CODE_SYS01");
attribute2dbField.put("chargeCodeSAL06", "SAL06_CHARGES.CHARGE_CODE");
attribute2dbField.put("descriptionSYS10", "SYS10_TRANSLATIONS.DESCRIPTION");
attribute2dbField.put("progressiveSys10SAL06", "SAL06_CHARGES.PROGRESSIVE_SYS10");
attribute2dbField.put("valueSAL06", "SAL06_CHARGES.VALUE");
attribute2dbField.put("percSAL06", "SAL06_CHARGES.PERC");
attribute2dbField.put("vatCodeReg01SAL06", "SAL06_CHARGES.VAT_CODE_REG01");
attribute2dbField.put("currencyCodeReg03SAL06", "SAL06_CHARGES.CURRENCY_CODE_REG03");
attribute2dbField.put("enabledSAL06", "SAL06_CHARGES.ENABLED");
ArrayList values = new ArrayList();
values.add(serverLanguageId);
// read from SAL06 table...
Response res =
CustomizeQueryUtil.getQuery(
conn,
userSessionPars,
sql,
values,
attribute2dbField,
ChargeVO.class,
"Y",
"N",
context,
gridParams,
50,
true,
new BigDecimal(292) // window identifier...
);
if (res.isError()) return res;
ArrayList list = ((VOListResponse) res).getRows();
ChargeVO vo = null;
sql =
"select SYS10_TRANSLATIONS.DESCRIPTION,REG01_VATS.VALUE,REG01_VATS.DEDUCTIBLE "
+ "from SYS10_TRANSLATIONS,REG01_VATS where "
+ "REG01_VATS.PROGRESSIVE_SYS10=SYS10_TRANSLATIONS.PROGRESSIVE and "
+ "SYS10_TRANSLATIONS.LANGUAGE_CODE=? and "
+ "REG01_VATS.VAT_CODE=?";
pstmt = conn.prepareStatement(sql);
ResultSet rset = null;
for (int i = 0; i < list.size(); i++) {
vo = (ChargeVO) list.get(i);
if (vo.getVatCodeReg01SAL06() != null) {
// retrieve vat data from REG01...
pstmt.setString(1, serverLanguageId);
pstmt.setString(2, vo.getVatCodeReg01SAL06());
rset = pstmt.executeQuery();
if (rset.next()) {
vo.setVatDescriptionSYS10(rset.getString(1));
vo.setVatValueREG01(rset.getBigDecimal(2));
vo.setVatDeductibleREG01(rset.getBigDecimal(3));
}
rset.close();
}
}
Response answer = res;
// fires the GenericEvent.BEFORE_COMMIT event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.BEFORE_COMMIT,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
answer));
return answer;
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"executeCommand",
"Error while fetching charges list",
ex);
return new ErrorResponse(ex.getMessage());
} finally {
try {
pstmt.close();
} catch (Exception ex2) {
}
try {
ConnectionManager.releaseConnection(conn, context);
} catch (Exception ex1) {
}
}
}
// ----------------------------------------------------------------------------
public void add(Branch NewBr) {
ListRows.add(NewBr);
}
/** Business logic to execute. */
public final Response executeCommand(
Object inputPar,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
Connection conn = null;
try {
conn = ConnectionManager.getConnection(context);
// fires the GenericEvent.CONNECTION_CREATED event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.CONNECTION_CREATED,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
null));
String sql =
"select SCH01_EMPLOYEES.COMPANY_CODE_SYS01,SCH01_EMPLOYEES.PROGRESSIVE_REG04,SCH01_EMPLOYEES.EMPLOYEE_CODE,"
+ "REG07_TASKS.TASK_CODE,REG04_SUBJECTS.NAME_1,REG04_SUBJECTS.NAME_2,SYS10_TRANSLATIONS.DESCRIPTION,SCH01_EMPLOYEES.PHONE_NUMBER,SCH01_EMPLOYEES.OFFICE "
+ "from SCH01_EMPLOYEES,SYS10_TRANSLATIONS,REG07_TASKS,REG04_SUBJECTS where "
+ "SCH01_EMPLOYEES.COMPANY_CODE_SYS01=REG07_TASKS.COMPANY_CODE_SYS01 and "
+ "SCH01_EMPLOYEES.TASK_CODE_REG07=REG07_TASKS.TASK_CODE and "
+ "REG07_TASKS.PROGRESSIVE_SYS10=SYS10_TRANSLATIONS.PROGRESSIVE and "
+ "SYS10_TRANSLATIONS.LANGUAGE_CODE=? and "
+ "SCH01_EMPLOYEES.COMPANY_CODE_SYS01=REG04_SUBJECTS.COMPANY_CODE_SYS01 and "
+ "SCH01_EMPLOYEES.PROGRESSIVE_REG04=REG04_SUBJECTS.PROGRESSIVE and "
+ "SCH01_EMPLOYEES.ENABLED='Y'";
GridParams gridParams = (GridParams) inputPar;
if (gridParams.getOtherGridParams().get(ApplicationConsts.COMPANY_CODE_SYS01) != null) {
sql +=
" and SCH01_EMPLOYEES.COMPANY_CODE_SYS01='"
+ gridParams.getOtherGridParams().get(ApplicationConsts.COMPANY_CODE_SYS01)
+ "'";
} else {
// retrieve companies list...
ArrayList companiesList =
((JAIOUserSessionParameters) userSessionPars).getCompanyBa().getCompaniesList("SCH01");
String companies = "";
for (int i = 0; i < companiesList.size(); i++)
companies += "'" + companiesList.get(i).toString() + "',";
companies = companies.substring(0, companies.length() - 1);
sql += " and SCH01_EMPLOYEES.COMPANY_CODE_SYS01 in (" + companies + ")";
}
Map attribute2dbField = new HashMap();
attribute2dbField.put("companyCodeSys01SCH01", "SCH01_EMPLOYEES.COMPANY_CODE_SYS01");
attribute2dbField.put("progressiveReg04SCH01", "SCH01_EMPLOYEES.PROGRESSIVE_REG04");
attribute2dbField.put("name_1REG04", "REG04_SUBJECTS.NAME_1");
attribute2dbField.put("name_2REG04", "REG04_SUBJECTS.NAME_2");
attribute2dbField.put("phoneNumberSCH01", "SCH01_EMPLOYEES.PHONE_NUMBER");
attribute2dbField.put("officeSCH01", "SCH01_EMPLOYEES.OFFICE");
attribute2dbField.put("employeeCodeSCH01", "SCH01_EMPLOYEES.EMPLOYEE_CODE");
attribute2dbField.put("descriptionSYS10", "SYS10_TRANSLATIONS.DESCRIPTION");
attribute2dbField.put("taskCodeReg07SCH01", "REG07_TASKS.TASK_CODE");
ArrayList values = new ArrayList();
values.add(serverLanguageId);
if (gridParams.getOtherGridParams().get(ApplicationConsts.TASK_CODE_REG07) != null) {
sql +=
" and SCH01_EMPLOYEES.TASK_CODE_REG07='"
+ gridParams.getOtherGridParams().get(ApplicationConsts.TASK_CODE_REG07)
+ "'";
}
// read from SCH01 table...
Response answer =
QueryUtil.getQuery(
conn,
userSessionPars,
sql,
values,
attribute2dbField,
GridEmployeeVO.class,
"Y",
"N",
context,
gridParams,
50,
true);
// fires the GenericEvent.BEFORE_COMMIT event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.BEFORE_COMMIT,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
answer));
return answer;
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"executeCommand",
"Error while fetching employees list",
ex);
return new ErrorResponse(ex.getMessage());
} finally {
try {
ConnectionManager.releaseConnection(conn, context);
} catch (Exception ex1) {
}
}
}
/**
* ﾒｿｯﾄﾞ概要 ・ﾕｰｻﾞｰ名一覧を設定する
*
* @param ・なし
* @return ・なし
*/
public void fEtexExecuteRecognitionSetAllStaffName() {
/* 社員名 */
String stgSelectStaff = null;
/* 選択ｵﾌﾟｼｮﾝ */
String stgSelect = null;
/* DB接続ﾊﾝﾄﾞﾙ */
CEtexGeneralDbHandle clsParamDbHandle = null;
/* 一覧情報格納ﾘｽﾄ */
ArrayList arrayDispData = null;
/* 画面表示ﾃﾞｰﾀBean */
CEtexRecognitionDispBean clsDispBean = null;
/* ﾘｸｴｽﾄ情報 */
HttpServletRequest hpRequest = null;
/* ﾘｸｴｽﾄ情報取得 */
hpRequest = clsRecognitionCtlBean.getRecognitionRequest();
/* DB接続ﾊﾝﾄﾞﾙ生成 */
clsParamDbHandle = new CEtexGeneralDbHandle();
/* ﾘｽﾄﾃﾞｰﾀ生成 */
arrayDispData = new ArrayList();
/* 選択されているﾕｰｻﾞ情報取得 */
stgSelectStaff = clsRecognitionCtlBean.getRecognitionSerchStaffCode();
/* 「全員」項目情報設定 */
clsDispBean = new CEtexRecognitionDispBean();
/* 選択ｵﾌﾟｼｮﾝ情報設定 */
clsDispBean.setRecognitionDispStaffSelect(ETEX_RECOGNITION_SELECT);
/* 対象ﾕｰｻﾞｰ社員ｺｰﾄﾞ設定 */
clsDispBean.setRecognitionDispStaffCode("000-0000");
/* 対象ﾕｰｻﾞｰ名前設定 */
clsDispBean.setRecognitionDispStaffName("全員");
/* 対象ﾕｰｻﾞｰよみがな設定 */
clsDispBean.setRecognitionDispStaffKana("ALL");
/* ﾘｽﾄ追加 */
arrayDispData.add(clsDispBean);
/* DBｵｰﾌﾟﾝ */
fEtexGeneralDbUtilOpen(clsParamDbHandle);
/* DBのExceptionｴﾗｰ用のtry */
try {
/* DB検索 */
fEtexGeneralDbUtilSelect(
clsParamDbHandle,
fEtexExecuteRecognitionPublishSql(ETEX_RECOGNITION_DB_SELECT_EIMD010_EX, null));
/* 検索結果が存在するかﾁｪｯｸ */
while (fEtexGeneralDbUtilSeek(clsParamDbHandle) == true) {
/* 画面表示Bean生成 */
clsDispBean = new CEtexRecognitionDispBean();
/* ﾘｽﾄ追加 */
/* 対象ﾕｰｻﾞと検索結果のﾕｰｻﾞｰ情報が一致するかﾁｪｯｸ */
if (stgSelectStaff.equals(fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "md010010v"))
== true) {
stgSelect = ETEX_RECOGNITION_SELECT;
} else {
stgSelect = ETEX_GENERAL_STRING_EMPTY;
}
/* 選択ｵﾌﾟｼｮﾝ情報設定 */
clsDispBean.setRecognitionDispStaffSelect(stgSelect);
/* 対象ﾕｰｻﾞｰ社員ｺｰﾄﾞ設定 */
clsDispBean.setRecognitionDispStaffCode(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "md010010v"));
/* 対象ﾕｰｻﾞｰ名前設定 */
clsDispBean.setRecognitionDispStaffName(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "md010110v"));
/* 対象ﾕｰｻﾞｰよみがな設定 */
clsDispBean.setRecognitionDispStaffKana(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "md010120v"));
/* ﾘｽﾄ追加 */
arrayDispData.add(clsDispBean);
}
} catch (Exception e) {
/* DBのExceptionｴﾗｰをCatchする為のcatch */
/* 例外情報設定 */
fEtexGeneralExceptionUtilSetRequest(hpRequest, e);
/* 例外情報表示 */
System.err.println(
"CEtexRecognitionExecute：fEtexExecuteRecognitionSetAllStaffName：" + e.toString());
}
/* DBｸﾛｰｽﾞ */
fEtexGeneralDbUtilClose(clsParamDbHandle);
/* 設定 */
clsRecognitionCtlBean.setRecognitionArrayDispBean(arrayDispData);
}
/**
* ﾒｿｯﾄﾞ概要 ・ﾃﾞｰﾀ（精算情報表示用）の読み込みｺﾝﾄﾛｰﾙ
*
* @param ・なし
* @return ・なし
*/
public void fEtexExecuteRecognitionReadCtl() {
/* DB接続ﾊﾝﾄﾞﾙ */
CEtexGeneralDbHandle clsParamDbHandle = null;
/* ﾃﾞｰﾀ情報 */
CEtexRecognitionDataBean clsDataBean = null;
/* ﾃﾞｰﾀ情報格納ﾘｽﾄ */
ArrayList arraData = null;
/* 編集ﾊﾞｯﾌｧ */
String stgbuf = null;
/* DB接続ﾊﾝﾄﾞﾙ生成 */
clsParamDbHandle = new CEtexGeneralDbHandle();
/* ﾘｽﾄﾃﾞｰﾀ生成 */
arraData = new ArrayList();
/* DBｵｰﾌﾟﾝ */
fEtexGeneralDbUtilOpen(clsParamDbHandle);
/* DBのExceptionｴﾗｰ用のtry */
try {
/* DB検索 */
fEtexGeneralDbUtilSelect(
clsParamDbHandle,
fEtexExecuteRecognitionPublishSql(ETEX_RECOGNITION_DB_SELECT_EITD100, null));
/* ﾃﾞｰﾀ読み込み */
for (int intCnt = 0; fEtexGeneralDbUtilSeek(clsParamDbHandle); intCnt++) {
clsDataBean = new CEtexRecognitionDataBean();
/* 承認ﾁｪｯｸﾎﾞｯｸｽ */
clsDataBean.setRecognitionDark_1(
fEtexExecuteRecognitionGetDark_1(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100170C")));
/* 解除ﾁｪｯｸﾎﾞｯｸｽ */
clsDataBean.setRecognitionDark_2(
fEtexExecuteRecognitionGetDark_2(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100170C")));
/* 社員ｺｰﾄﾞ */
clsDataBean.setRecognitionDataStaff(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "MD010010V"));
/* 社員名 */
clsDataBean.setRecognitionDataName(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "MD010110V"));
/* 年／月／日（yyyy/mm/dd） */
stgbuf =
fEtexGeneralStringUtilFormatChk(
ETEX_RECOGNITION_FORMAT_YYYYMMDD,
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100020V"),
ETEX_RECOGNITION_STRING_EMPTY_YYYYMMDD);
clsDataBean.setRecognitionDataDate(stgbuf);
/* 月／日（mm/dd） */
stgbuf =
fEtexGeneralStringUtilFormatChk(
ETEX_RECOGNITION_FORMAT_MMDD,
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100020V").substring(5, 10),
ETEX_RECOGNITION_STRING_EMPTY_MMDD);
clsDataBean.setRecognitionDataMMDD(
fEtexGeneralStringUtilReplace(
stgbuf, 2, ETEX_RECOGNITION_STRING_SLASH, ETEX_RECOGNITION_STRING_EMPTY_MMDD));
/* 曜日（d） */
stgbuf =
fEtexGeneralStringUtilFormatChk(
ETEX_RECOGNITION_FORMAT_YYYYMMDD,
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100020V"),
ETEX_RECOGNITION_STRING_EMPTY_YYYYMMDD);
clsDataBean.setRecognitionDataToday("(" + fEtexGeneralDbUtilGetDayOfWeek(stgbuf) + ")");
/* 曜日（ｶﾗｰ）*/
clsDataBean.setRecognitionDataTodayColor(fEtexGeneralDbUtilGetDayOfWeekColor(stgbuf));
/* index */
clsDataBean.setRecognitionDataIndex(
ETEX_GENERAL_STRING_EMPTY
+ fEtexGeneralDbUtilGetDataInt(clsParamDbHandle, "TD100030I"));
/* 精算区分 */
clsDataBean.setRecognitionDataClassify(
fEtexExecuteRecognitionGetClassify(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100170C")));
/* 訪問先 */
clsDataBean.setRecognitionDataVisit(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100100V"));
/* 用件 */
clsDataBean.setRecognitionDataMatter(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100110V"));
/* from */
clsDataBean.setRecognitionDataFrom(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100120V"));
/* きごう*/
clsDataBean.setRecognitionDataArrow(
fEtexExecuteRecognitionGetArrow(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100130C")));
/* to */
clsDataBean.setRecognitionDataTo(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "TD100140V"));
/* 機関 */
clsDataBean.setRecognitionDataFacility(
fEtexGeneralDbUtilGetFacility(
fEtexGeneralDbUtilGetDataString(clsParamDbHandle, "MD120010C")));
/* 金額*/
clsDataBean.setRecognitionDataMoney(
fEexGeneralNumericalUtilCnvStringMoney(
fEtexGeneralDbUtilGetDataInt(clsParamDbHandle, "TD100150N")));
/* ﾘｽﾄ追加 */
arraData.add(clsDataBean);
}
} catch (Exception e) {
/* DBのExceptionｴﾗｰをCatchする為のcatch */
/* 例外情報設定 */
fEtexGeneralExceptionUtilSetRequest(clsRecognitionCtlBean.getRecognitionRequest(), e);
/* 例外情報表示 */
System.err.println("CEtexRecognitionExecute：fEtexExecuteRecognitionReadCtl：" + e.toString());
}
/* DBｸﾛｰｽﾞ */
fEtexGeneralDbUtilClose(clsParamDbHandle);
/* ﾘｽﾄﾃﾞｰﾀ格納 */
clsRecognitionCtlBean.setRecognitionArrayDataBean(arraData);
/* 次ﾌｪｰｽﾞの設定 */
clsRecognitionCtlBean.setRecognitionPhase(ETEX_RECOGNITION_PHASE_SCREEN_ADJUST);
}
/**
* Processes requests for both HTTP <code>GET</code> and <code>POST</code> methods.
*
* @param request servlet request
* @param response servlet response
* @throws javax.servlet.ServletException if a servlet-specific error occurs
* @throws java.io.IOException if an I/O error occurs
*/
protected void doGet(HttpServletRequest request, HttpServletResponse response)
throws IOException, ServletException {
XDebug xdebug = new XDebug();
xdebug.startTimer();
response.setContentType("application/json");
PrintWriter writer = response.getWriter();
try {
List resultsList = new LinkedList();
// Get the gene list
String geneList = request.getParameter(QueryBuilder.GENE_LIST);
if (request instanceof XssRequestWrapper) {
geneList = ((XssRequestWrapper) request).getRawParameter(QueryBuilder.GENE_LIST);
}
String cancerStudyIdListString = request.getParameter(QueryBuilder.CANCER_STUDY_LIST);
String[] cancerStudyIdList = cancerStudyIdListString.split(",");
// Get the priority
Integer dataTypePriority;
try {
dataTypePriority =
Integer.parseInt(request.getParameter(QueryBuilder.DATA_PRIORITY).trim());
} catch (NumberFormatException e) {
dataTypePriority = 0;
}
// Cancer All Cancer Studies
List<CancerStudy> cancerStudiesList = accessControl.getCancerStudies();
HashMap<String, Boolean> studyMap = new HashMap<>();
for (String studyId : cancerStudyIdList) {
studyMap.put(studyId, Boolean.TRUE);
}
for (CancerStudy cancerStudy : cancerStudiesList) {
String cancerStudyId = cancerStudy.getCancerStudyStableId();
if (!studyMap.containsKey(cancerStudyId)) {
continue;
}
if (cancerStudyId.equalsIgnoreCase("all")) continue;
Map cancerMap = new LinkedHashMap();
cancerMap.put("studyId", cancerStudyId);
cancerMap.put("typeOfCancer", cancerStudy.getTypeOfCancerId());
// Get all Genetic Profiles Associated with this Cancer Study ID.
ArrayList<GeneticProfile> geneticProfileList =
GetGeneticProfiles.getGeneticProfiles(cancerStudyId);
// Get all Patient Lists Associated with this Cancer Study ID.
ArrayList<SampleList> sampleSetList = GetSampleLists.getSampleLists(cancerStudyId);
// Get the default patient set
AnnotatedSampleSets annotatedSampleSets =
new AnnotatedSampleSets(sampleSetList, dataTypePriority);
SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList();
if (defaultSampleSet == null) {
continue;
}
List<String> sampleIds = defaultSampleSet.getSampleList();
// Get the default genomic profiles
CategorizedGeneticProfileSet categorizedGeneticProfileSet =
new CategorizedGeneticProfileSet(geneticProfileList);
HashMap<String, GeneticProfile> defaultGeneticProfileSet = null;
switch (dataTypePriority) {
case 2:
defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultCopyNumberMap();
break;
case 1:
defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationMap();
break;
case 0:
default:
defaultGeneticProfileSet =
categorizedGeneticProfileSet.getDefaultMutationAndCopyNumberMap();
}
String mutationProfile = "", cnaProfile = "";
for (GeneticProfile geneticProfile : defaultGeneticProfileSet.values()) {
GeneticAlterationType geneticAlterationType = geneticProfile.getGeneticAlterationType();
if (geneticAlterationType.equals(GeneticAlterationType.COPY_NUMBER_ALTERATION)) {
cnaProfile = geneticProfile.getStableId();
} else if (geneticAlterationType.equals(GeneticAlterationType.MUTATION_EXTENDED)) {
mutationProfile = geneticProfile.getStableId();
}
}
cancerMap.put("mutationProfile", mutationProfile);
cancerMap.put("cnaProfile", cnaProfile);
cancerMap.put("caseSetId", defaultSampleSet.getStableId());
cancerMap.put("caseSetLength", sampleIds.size());
ProfileDataSummary genomicData =
getGenomicData(
cancerStudyId,
defaultGeneticProfileSet,
defaultSampleSet,
geneList,
sampleSetList,
request,
response);
ArrayList<GeneWithScore> geneFrequencyList = genomicData.getGeneFrequencyList();
ArrayList<String> genes = new ArrayList<String>();
for (GeneWithScore geneWithScore : geneFrequencyList) genes.add(geneWithScore.getGene());
int noOfMutated = 0,
noOfCnaUp = 0,
noOfCnaDown = 0,
noOfCnaLoss = 0,
noOfCnaGain = 0,
noOfOther = 0,
noOfAll = 0;
boolean skipStudy = defaultGeneticProfileSet.isEmpty();
if (!skipStudy) {
for (String sampleId : sampleIds) {
if (sampleId == null) {
continue;
}
if (!genomicData.isCaseAltered(sampleId)) continue;
boolean isAnyMutated = false,
isAnyCnaUp = false,
isAnyCnaDown = false,
isAnyCnaLoss = false,
isAnyCnaGain = false;
for (String gene : genes) {
isAnyMutated |= genomicData.isGeneMutated(gene, sampleId);
GeneticTypeLevel cnaLevel = genomicData.getCNALevel(gene, sampleId);
boolean isCnaUp = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.Amplified);
isAnyCnaUp |= isCnaUp;
boolean isCnaDown =
cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.HomozygouslyDeleted);
isAnyCnaDown |= isCnaDown;
boolean isCnaLoss =
cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.HemizygouslyDeleted);
isAnyCnaLoss |= isCnaLoss;
boolean isCnaGain = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.Gained);
isAnyCnaGain |= isCnaGain;
}
boolean isAnyCnaChanged = isAnyCnaUp || isAnyCnaDown;
if (isAnyMutated && !isAnyCnaChanged) noOfMutated++;
else if (isAnyMutated && isAnyCnaChanged) noOfOther++;
else if (isAnyCnaUp) noOfCnaUp++;
else if (isAnyCnaDown) noOfCnaDown++;
else if (isAnyCnaGain) noOfCnaGain++;
else if (isAnyCnaLoss) noOfCnaLoss++;
noOfAll++;
}
}
Map alterations = new LinkedHashMap();
cancerMap.put("alterations", alterations);
alterations.put("all", noOfAll);
alterations.put("mutation", noOfMutated);
alterations.put("cnaUp", noOfCnaUp);
alterations.put("cnaDown", noOfCnaDown);
alterations.put("cnaLoss", noOfCnaLoss);
alterations.put("cnaGain", noOfCnaGain);
alterations.put("other", noOfOther);
cancerMap.put("genes", genes);
cancerMap.put("skipped", skipStudy);
resultsList.add(cancerMap);
}
JSONValue.writeJSONString(resultsList, writer);
} catch (DaoException e) {
throw new ServletException(e);
} catch (ProtocolException e) {
throw new ServletException(e);
} finally {
writer.close();
}
}
/**
* Checks a function for RESTFful annotations.
*
* @return {@code true} if module contains relevant annotations
* @throws QueryException query exception
*/
boolean analyze() throws QueryException {
// parse all annotations
final EnumSet<HTTPMethod> mth = EnumSet.noneOf(HTTPMethod.class);
final boolean[] declared = new boolean[function.args.length];
boolean found = false;
final int as = function.ann.size();
for (int a = 0; a < as; a++) {
final QNm name = function.ann.names[a];
final Value value = function.ann.values[a];
final byte[] local = name.local();
final byte[] uri = name.uri();
final boolean rexq = eq(uri, QueryText.RESTXQURI);
if (rexq) {
if (eq(PATH, local)) {
// annotation "path"
if (path != null) error(ANN_TWICE, "%", name.string());
path = new RestXqPath(toString(value, name));
for (final String s : path) {
if (s.trim().startsWith("{")) checkVariable(s, AtomType.AAT, declared);
}
} else if (eq(CONSUMES, local)) {
// annotation "consumes"
strings(value, name, consumes);
} else if (eq(PRODUCES, local)) {
// annotation "produces"
strings(value, name, produces);
} else if (eq(QUERY_PARAM, local)) {
// annotation "query-param"
queryParams.add(param(value, name, declared));
} else if (eq(FORM_PARAM, local)) {
// annotation "form-param"
formParams.add(param(value, name, declared));
} else if (eq(HEADER_PARAM, local)) {
// annotation "header-param"
headerParams.add(param(value, name, declared));
} else if (eq(COOKIE_PARAM, local)) {
// annotation "cookie-param"
cookieParams.add(param(value, name, declared));
} else {
// method annotations
final HTTPMethod m = HTTPMethod.get(string(local));
if (m == null) error(ANN_UNKNOWN, "%", name.string());
if (!value.isEmpty()) {
// remember post/put variable
if (requestBody != null) error(ANN_TWICE, "%", name.string());
if (m != POST && m != PUT) error(METHOD_VALUE, m);
requestBody = checkVariable(toString(value, name), declared);
}
if (mth.contains(m)) error(ANN_TWICE, "%", name.string());
mth.add(m);
}
} else if (eq(uri, QueryText.OUTPUTURI)) {
// serialization parameters
final String key = string(local);
final String val = toString(value, name);
if (output.get(key) == null) error(UNKNOWN_SER, key);
output.set(key, val);
}
found |= rexq;
}
if (!mth.isEmpty()) methods = mth;
if (found) {
if (path == null) error(ANN_MISSING, PATH);
for (int i = 0; i < declared.length; i++)
if (!declared[i]) error(VAR_UNDEFINED, function.args[i].name.string());
}
return found;
}
// getUserSources -
private Map<String, String> getUserSourcesAndShares(
HttpServletRequest request, HttpServletResponse response) {
Map<String, String> userSources = new HashMap<String, String>();
String userIdStr = null;
// publishedSources - array of source._ids of published sources
ArrayList<String> publishedSources = new ArrayList<String>();
try {
JSONObject personObj = new JSONObject(getPerson(request, response));
if (personObj.has("data")) {
JSONObject person = new JSONObject(personObj.getString("data"));
userIdStr = person.getString("_id");
}
// Get the user's shares from social.share where type = source or source_published
String tempJson = getSourceShares(request, response);
// Covert to JSONObject
JSONObject json = new JSONObject(tempJson);
JSONObject json_response = json.getJSONObject("response");
if (json_response.getString("success").equalsIgnoreCase("true")) {
if (json.has("data")) {
// Iterate over share objects and write to our collection
JSONArray data = json.getJSONArray("data");
for (int i = 0; i < data.length(); i++) {
JSONObject shareObj = data.getJSONObject(i);
String tempTitle = shareObj.getString("title");
JSONObject sourceObj = new JSONObject(shareObj.getString("share"));
if (sourceObj.has("_id")) publishedSources.add(sourceObj.getString("_id"));
if (sourceObj.has("ownerId")
&& !sourceObj.getString("ownerId").equalsIgnoreCase(userIdStr)) tempTitle += " (+)";
tempTitle += " (*)";
userSources.put(tempTitle, shareObj.getString("_id"));
}
}
}
// Get sources that the user owns from ingest.source
tempJson = getUserSources(request, response);
if (tempJson != null) {
json = new JSONObject(tempJson);
json_response = json.getJSONObject("response");
if (json_response.getString("success").equalsIgnoreCase("true")) {
if (json.has("data")) {
// Iterate over source objects and write to our collection
JSONArray data = json.getJSONArray("data");
for (int i = 0; i < data.length(); i++) {
JSONObject sourceObj = data.getJSONObject(i);
// Only add the source to our list if it isn't already in our
if (!publishedSources.contains(sourceObj.getString("_id"))) {
String tempTitle = sourceObj.getString("title");
if (sourceObj.has("ownerId")
&& !sourceObj.getString("ownerId").equalsIgnoreCase(userIdStr))
tempTitle += " (+)";
userSources.put(tempTitle, sourceObj.getString("_id"));
}
}
}
}
}
} catch (Exception e) {
System.out.println(e.getMessage());
}
return userSources;
}
/**
* Check if components required by specified products are available.
*
* @param products list of ProdOrderProductVO objects
* @params compAltComps collection of <component item code,HashSet of alternative component item
* codes>; filled by this method (and given back by reference)
* @return VOListResponse of ProdOrderComponentVO objects
*/
public final Response checkComponentsAvailability(
Connection conn,
Hashtable compAltComps,
ArrayList products,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
try {
// retrieve internationalization settings (Resources object)...
ServerResourcesFactory factory =
(ServerResourcesFactory) context.getAttribute(Controller.RESOURCES_FACTORY);
Resources resources = factory.getResources(userSessionPars.getLanguageId());
if (products.size() == 0) {
return new VOListResponse(new ArrayList(), false, 0);
}
// fill in comps hashtable with the collection of required components...
ItemPK pk = null;
ProdOrderProductVO prodVO = null;
ArrayList components = null;
MaterialVO compVO = null;
Response res = null;
ProdOrderComponentVO componentVO = null;
Hashtable comps =
new Hashtable(); // collection of <component item code,ProdOrderComponentVO object>
for (int i = 0; i < products.size(); i++) {
// retrieve bill of materials for each product...
prodVO = (ProdOrderProductVO) products.get(i);
pk = new ItemPK(prodVO.getCompanyCodeSys01DOC23(), prodVO.getItemCodeItm01DOC23());
res =
bean.getBillOfMaterials(
conn, pk, userSessionPars, request, response, userSession, context);
if (res.isError()) {
return res;
}
// extract components only (leaf nodes)...
components =
getComponents(
(DefaultMutableTreeNode) ((TreeModel) ((VOResponse) res).getVo()).getRoot());
for (int j = 0; j < components.size(); j++) {
compVO = (MaterialVO) components.get(j);
componentVO = (ProdOrderComponentVO) comps.get(compVO.getItemCodeItm01ITM03());
if (componentVO == null) {
componentVO = new ProdOrderComponentVO();
comps.put(compVO.getItemCodeItm01ITM03(), componentVO);
componentVO.setAvailableQty(new BigDecimal(0));
componentVO.setCompanyCodeSys01DOC24(compVO.getCompanyCodeSys01ITM03());
componentVO.setDescriptionSYS10(compVO.getDescriptionSYS10());
componentVO.setDocNumberDOC24(prodVO.getDocNumberDOC23());
componentVO.setDocYearDOC24(prodVO.getDocYearDOC23());
componentVO.setItemCodeItm01DOC24(compVO.getItemCodeItm01ITM03());
componentVO.setMinSellingQtyUmCodeReg02ITM01(compVO.getMinSellingQtyUmCodeReg02ITM01());
componentVO.setQtyDOC24(new BigDecimal(0));
}
componentVO.setQtyDOC24(
componentVO.getQtyDOC24().add(compVO.getQtyITM03().multiply(prodVO.getQtyDOC23())));
}
}
// check components availability in the specified warehouse...
Enumeration en = comps.keys();
GridParams gridParams = new GridParams();
gridParams
.getOtherGridParams()
.put(ApplicationConsts.COMPANY_CODE_SYS01, prodVO.getCompanyCodeSys01DOC23());
gridParams
.getOtherGridParams()
.put(ApplicationConsts.WAREHOUSE_CODE, prodVO.getWarehouseCodeWar01DOC22());
gridParams.getOtherGridParams().put(ApplicationConsts.LOAD_ALL, Boolean.TRUE);
ItemAvailabilityVO availVO = null;
BigDecimal availability, altAvailability, delta;
String itemCode = null;
ArrayList list, availList;
AltComponentVO altVO = null;
ArrayList alternativeComps = new ArrayList();
ArrayList compsToRemove = new ArrayList();
ProdOrderComponentVO altComponentVO = null;
HashSet altCodes = null; // list of alternative component item codes...
BigDecimal altQty = null;
while (en.hasMoreElements()) {
itemCode = en.nextElement().toString();
componentVO = (ProdOrderComponentVO) comps.get(itemCode);
gridParams
.getOtherGridParams()
.put(
ApplicationConsts.ITEM_PK, new ItemPK(prodVO.getCompanyCodeSys01DOC23(), itemCode));
res =
avail.executeCommand(
gridParams, userSessionPars, request, response, userSession, context);
if (res.isError()) return res;
availList = ((VOListResponse) res).getRows();
componentVO.setAvailabilities(availList);
availability = new BigDecimal(0);
for (int i = 0; i < availList.size(); i++) {
availVO = (ItemAvailabilityVO) availList.get(i);
availability = availability.add(availVO.getAvailableQtyWAR03());
}
componentVO.setAvailableQty(availability);
if (componentVO.getQtyDOC24().doubleValue() > componentVO.getAvailableQty().doubleValue()) {
// check if there exist some alternative component...
res =
altComps.executeCommand(
gridParams, userSessionPars, request, response, userSession, context);
if (res.isError()) return res;
list = ((VOListResponse) res).getRows();
for (int i = 0; i < list.size(); i++) {
altVO = (AltComponentVO) list.get(i);
gridParams
.getOtherGridParams()
.put(
ApplicationConsts.ITEM_PK,
new ItemPK(prodVO.getCompanyCodeSys01DOC23(), altVO.getItemCodeItm01ITM04()));
res =
avail.executeCommand(
gridParams, userSessionPars, request, response, userSession, context);
if (res.isError()) return res;
availList = ((VOListResponse) res).getRows();
altAvailability = new BigDecimal(0);
for (int j = 0; j < availList.size(); j++) {
availVO = (ItemAvailabilityVO) availList.get(j);
altAvailability = altAvailability.add(availVO.getAvailableQtyWAR03());
}
if (altAvailability.doubleValue() > 0) {
altComponentVO = new ProdOrderComponentVO();
altComponentVO.setAvailabilities(availList);
altComponentVO.setAvailableQty(altAvailability);
altComponentVO.setCompanyCodeSys01DOC24(altVO.getCompanyCodeSys01ITM04());
altComponentVO.setDescriptionSYS10(altVO.getDescriptionSYS10());
altComponentVO.setDocNumberDOC24(prodVO.getDocNumberDOC23());
altComponentVO.setDocYearDOC24(prodVO.getDocYearDOC23());
altComponentVO.setItemCodeItm01DOC24(altVO.getItemCodeItm01ITM04());
altComponentVO.setMinSellingQtyUmCodeReg02ITM01(
altVO.getMinSellingQtyUmCodeReg02ITM01());
altQty =
conv.convertQty(
altVO.getMinSellingQtyUmCodeReg02ITM01(),
componentVO.getMinSellingQtyUmCodeReg02ITM01(),
altAvailability,
userSessionPars,
request,
response,
userSession,
context);
if (componentVO.getQtyDOC24().subtract(availability).doubleValue()
> altQty.doubleValue()) {
delta = altQty;
altComponentVO.setQtyDOC24(altAvailability);
} else {
delta = componentVO.getQtyDOC24();
altComponentVO.setQtyDOC24(
conv.convertQty(
componentVO.getMinSellingQtyUmCodeReg02ITM01(),
altVO.getMinSellingQtyUmCodeReg02ITM01(),
delta,
userSessionPars,
request,
response,
userSession,
context));
}
componentVO.setQtyDOC24(componentVO.getQtyDOC24().subtract(delta));
alternativeComps.add(altComponentVO);
altCodes = (HashSet) compAltComps.get(itemCode);
if (altCodes == null) {
altCodes = new HashSet();
compAltComps.put(itemCode, altCodes);
}
altCodes.add(altVO.getItemCodeItm01ITM04());
if (componentVO.getQtyDOC24().doubleValue() == 0) {
compsToRemove.add(componentVO);
break;
}
if (componentVO.getQtyDOC24().subtract(availability).doubleValue() == 0) break;
}
}
}
}
list = new ArrayList(comps.values());
list.addAll(alternativeComps);
list.removeAll(compsToRemove);
return new VOListResponse(list, false, list.size());
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"checkComponentsAvailability",
"Error while retrieving components availability for the specified production order",
ex);
return new ErrorResponse(ex.getMessage());
}
}
/** Business logic to execute. */
public final Response executeCommand(
Object inputPar,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
PreparedStatement pstmt = null;
Connection conn = null;
try {
conn = ConnectionManager.getConnection(context);
// fires the GenericEvent.CONNECTION_CREATED event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.CONNECTION_CREATED,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
null));
GridParams pars = (GridParams) inputPar;
BigDecimal rootProgressiveHIE01 =
(BigDecimal) pars.getOtherGridParams().get(ApplicationConsts.ROOT_PROGRESSIVE_HIE01);
BigDecimal progressiveHIE01 =
(BigDecimal) pars.getOtherGridParams().get(ApplicationConsts.PROGRESSIVE_HIE01);
BigDecimal progressiveHIE02 =
(BigDecimal) pars.getOtherGridParams().get(ApplicationConsts.PROGRESSIVE_HIE02);
Boolean productsOnly =
(Boolean) pars.getOtherGridParams().get(ApplicationConsts.PRODUCTS_ONLY);
Boolean compsOnly =
(Boolean) pars.getOtherGridParams().get(ApplicationConsts.COMPONENTS_ONLY);
HierarchyLevelVO vo =
(HierarchyLevelVO) pars.getOtherGridParams().get(ApplicationConsts.TREE_FILTER);
if (vo != null) {
progressiveHIE01 = vo.getProgressiveHIE01();
progressiveHIE02 = vo.getProgressiveHie02HIE01();
}
// retrieve companies list...
ArrayList companiesList =
((JAIOUserSessionParameters) userSessionPars).getCompanyBa().getCompaniesList("ITM01");
String companies = "";
for (int i = 0; i < companiesList.size(); i++)
companies += "'" + companiesList.get(i).toString() + "',";
companies = companies.substring(0, companies.length() - 1);
String sql =
"select ITM01_ITEMS.COMPANY_CODE_SYS01,ITM01_ITEMS.ITEM_CODE,SYS10_TRANSLATIONS.DESCRIPTION,ITM01_ITEMS.PROGRESSIVE_HIE02,ITM01_ITEMS.MIN_SELLING_QTY_UM_CODE_REG02,"
+ "ITM01_ITEMS.PROGRESSIVE_HIE01,ITM01_ITEMS.SERIAL_NUMBER_REQUIRED,REG02_MEASURE_UNITS.DECIMALS "
+ " from ITM01_ITEMS,SYS10_TRANSLATIONS,REG02_MEASURE_UNITS where "
+ "ITM01_ITEMS.PROGRESSIVE_HIE02=? and "
+ "ITM01_ITEMS.PROGRESSIVE_SYS10=SYS10_TRANSLATIONS.PROGRESSIVE and "
+ "SYS10_TRANSLATIONS.LANGUAGE_CODE=? and "
+ "ITM01_ITEMS.COMPANY_CODE_SYS01 in ("
+ companies
+ ") and "
+ "ITM01_ITEMS.ENABLED='Y' and "
+ "ITM01_ITEMS.MIN_SELLING_QTY_UM_CODE_REG02=REG02_MEASURE_UNITS.UM_CODE ";
if (productsOnly != null && productsOnly.booleanValue())
sql += " and ITM01_ITEMS.MANUFACTURE_CODE_PRO01 is not null ";
if (compsOnly != null && compsOnly.booleanValue())
sql += " and ITM01_ITEMS.MANUFACTURE_CODE_PRO01 is null ";
if (rootProgressiveHIE01 == null || !rootProgressiveHIE01.equals(progressiveHIE01)) {
// retrieve all subnodes of the specified node...
pstmt =
conn.prepareStatement(
"select HIE01_LEVELS.PROGRESSIVE,HIE01_LEVELS.PROGRESSIVE_HIE01,HIE01_LEVELS.LEV from HIE01_LEVELS "
+ "where ENABLED='Y' and PROGRESSIVE_HIE02=? and PROGRESSIVE>=? "
+ "order by LEV,PROGRESSIVE_HIE01,PROGRESSIVE");
pstmt.setBigDecimal(1, progressiveHIE02);
pstmt.setBigDecimal(2, progressiveHIE01);
ResultSet rset = pstmt.executeQuery();
HashSet currentLevelNodes = new HashSet();
HashSet newLevelNodes = new HashSet();
String nodes = "";
int currentLevel = -1;
while (rset.next()) {
if (currentLevel != rset.getInt(3)) {
// next level...
currentLevel = rset.getInt(3);
currentLevelNodes = newLevelNodes;
newLevelNodes = new HashSet();
}
if (rset.getBigDecimal(1).equals(progressiveHIE01)) {
newLevelNodes.add(rset.getBigDecimal(1));
nodes += rset.getBigDecimal(1) + ",";
} else if (currentLevelNodes.contains(rset.getBigDecimal(2))) {
newLevelNodes.add(rset.getBigDecimal(1));
nodes += rset.getBigDecimal(1) + ",";
}
}
rset.close();
pstmt.close();
if (nodes.length() > 0) nodes = nodes.substring(0, nodes.length() - 1);
sql += " and PROGRESSIVE_HIE01 in (" + nodes + ")";
}
Map attribute2dbField = new HashMap();
attribute2dbField.put("companyCodeSys01ITM01", "ITM01_ITEMS.COMPANY_CODE_SYS01");
attribute2dbField.put("itemCodeITM01", "ITM01_ITEMS.ITEM_CODE");
attribute2dbField.put("descriptionSYS10", "SYS10_TRANSLATIONS.DESCRIPTION");
attribute2dbField.put("progressiveHie02ITM01", "ITM01_ITEMS.PROGRESSIVE_HIE02");
attribute2dbField.put(
"minSellingQtyUmCodeReg02ITM01", "ITM01_ITEMS.MIN_SELLING_QTY_UM_CODE_REG02");
attribute2dbField.put("progressiveHie01ITM01", "ITM01_ITEMS.PROGRESSIVE_HIE01");
attribute2dbField.put("serialNumberRequiredITM01", "ITM01_ITEMS.SERIAL_NUMBER_REQUIRED");
attribute2dbField.put("decimalsREG02", "REG02_MEASURE_UNITS.DECIMALS");
ArrayList values = new ArrayList();
values.add(progressiveHIE02);
values.add(serverLanguageId);
// read from ITM01 table...
Response answer =
QueryUtil.getQuery(
conn,
userSessionPars,
sql,
values,
attribute2dbField,
GridItemVO.class,
"Y",
"N",
context,
pars,
50,
true);
// fires the GenericEvent.BEFORE_COMMIT event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.BEFORE_COMMIT,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
answer));
return answer;
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"executeCommand",
"Error while fetching items list",
ex);
return new ErrorResponse(ex.getMessage());
} finally {
try {
pstmt.close();
} catch (Exception ex2) {
}
try {
ConnectionManager.releaseConnection(conn, context);
} catch (Exception ex1) {
}
}
}
public void doGet(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
response.setContentType("text/html");
PrintWriter out = response.getWriter();
out.println("<br><h4>we are getting data</h4>");
String code = request.getParameter("code");
out.println("<br>code: " + code);
out.println("<br>");
try {
OAuthClientRequest requestOAuth =
OAuthClientRequest.tokenLocation("https://graph.facebook.com/oauth/access_token")
.setGrantType(GrantType.AUTHORIZATION_CODE)
.setClientId(apiKey)
.setClientSecret(secretKey)
.setRedirectURI(redirectUri)
.setCode(code)
.buildBodyMessage();
OAuthClient oAuthClient = new OAuthClient(new URLConnectionClient());
GitHubTokenResponse oAuthResponse =
oAuthClient.accessToken(requestOAuth, GitHubTokenResponse.class);
accessToken = oAuthResponse.getAccessToken();
expiresIn = oAuthResponse.getExpiresIn();
} catch (OAuthSystemException ae) {
ae.printStackTrace();
} catch (OAuthProblemException pe) {
pe.printStackTrace();
}
// out.println("<br>Access Token: " + accessToken);
// out.println("<br>Expires In: " + expiresIn);
try {
FacebookClient facebookClient = new DefaultFacebookClient(accessToken);
myFriends = facebookClient.fetchConnection("me/friends", User.class);
myFeeds = facebookClient.fetchConnection("me/home", Post.class);
for (User myFriend : myFriends.getData()) {
f.add(myFriend.getName());
out.println("<br>id: " + myFriend.getId() + " Name: " + myFriend.getName());
}
// out.println("<br>");
out.println("<br>f count: " + f.size());
} catch (FacebookException e) {
e.printStackTrace();
}
facebookDataBean fdb = new facebookDataBean();
fdb.setName("zishan ali khan");
HttpSession session = request.getSession();
if (session != null) {
session.setAttribute("myfdb", fdb);
session.setAttribute("yourFriends", f);
session.setAttribute("feeds", myFeeds);
RequestDispatcher view = request.getRequestDispatcher("result.jsp");
view.forward(request, response);
f.clear();
// out.println("<br>I am in");
} else {
// out.println("<br>Session Over");
}
}
/** Business logic to execute. */
public final Response executeCommand(
Object inputPar,
UserSessionParameters userSessionPars,
HttpServletRequest request,
HttpServletResponse response,
HttpSession userSession,
ServletContext context) {
String serverLanguageId = ((JAIOUserSessionParameters) userSessionPars).getServerLanguageId();
String username = ((JAIOUserSessionParameters) userSessionPars).getUsername();
Connection conn = null;
Statement stmt = null;
try {
conn = ConnectionManager.getConnection(context);
// fires the GenericEvent.CONNECTION_CREATED event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.CONNECTION_CREATED,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
null));
stmt = conn.createStatement();
ResultSet rset =
stmt.executeQuery(
"select SYS04_ROLES.PROGRESSIVE,SYS04_ROLES.PROGRESSIVE_SYS10,SYS10_TRANSLATIONS.DESCRIPTION from "
+ "SYS14_USER_ROLES,SYS04_ROLES,SYS10_TRANSLATIONS where "
+ "SYS14_USER_ROLES.PROGRESSIVE_SYS04=SYS04_ROLES.PROGRESSIVE and "
+ "SYS04_ROLES.PROGRESSIVE_SYS10=SYS10_TRANSLATIONS.PROGRESSIVE and "
+ "SYS10_TRANSLATIONS.LANGUAGE_CODE='"
+ serverLanguageId
+ "' and "
+ "SYS14_USER_ROLES.USERNAME_SYS03='"
+ username
+ "' and "
+ "SYS04_ROLES.ENABLED='Y'");
RoleVO vo = null;
ArrayList list = new ArrayList();
while (rset.next()) {
vo = new RoleVO();
vo.setDescriptionSYS10(rset.getString(3));
vo.setEnabledSYS04("Y");
vo.setProgressiveSYS04(rset.getBigDecimal(1));
vo.setProgressiveSys10SYS04(rset.getBigDecimal(2));
list.add(vo);
}
rset.close();
Response answer = new VOListResponse(list, false, list.size());
// fires the GenericEvent.BEFORE_COMMIT event...
EventsManager.getInstance()
.processEvent(
new GenericEvent(
this,
getRequestName(),
GenericEvent.BEFORE_COMMIT,
(JAIOUserSessionParameters) userSessionPars,
request,
response,
userSession,
context,
conn,
inputPar,
answer));
return answer;
} catch (Throwable ex) {
Logger.error(
userSessionPars.getUsername(),
this.getClass().getName(),
"executeCommand",
"Error while fetching user roles list",
ex);
return new ErrorResponse(ex.getMessage());
} finally {
try {
stmt.close();
} catch (Exception ex2) {
}
try {
ConnectionManager.releaseConnection(conn, context);
} catch (Exception ex1) {
}
}
}