private void getStateAtoms(SB sb) {
BS bsDone = new BS();
Map<String, BS> temp = new Hashtable<String, BS>();
Map<String, BS> temp2 = new Hashtable<String, BS>();
for (Ellipsoid e : atomEllipsoids.values()) {
int iType = e.tensor.iType;
if (bsDone.get(iType + 1)) continue;
bsDone.set(iType + 1);
boolean isADP = (e.tensor.iType == Tensor.TYPE_ADP);
String cmd = (isADP ? null : "Ellipsoids set " + PT.esc(e.tensor.type));
for (Ellipsoid e2 : atomEllipsoids.values()) {
if (e2.tensor.iType != iType || isADP && !e2.isOn) continue;
int i = e2.tensor.atomIndex1;
//
BSUtil.setMapBitSet(
temp,
i,
i,
(isADP
? "Ellipsoids " + e2.percent
: cmd
+ " scale "
+ e2.scale
+ (e2.options == null ? "" : " options " + PT.esc(e2.options))
+ (e2.isOn ? " ON" : " OFF")));
if (e2.colix != C.INHERIT_ALL)
BSUtil.setMapBitSet(
temp2, i, i, getColorCommand(cmd, e2.pid, e2.colix, translucentAllowed));
}
}
sb.append(vwr.getCommands(temp, temp2, "select"));
}
private String getMoState(int modelIndex) {
strID = getId(modelIndex);
if (!getSettings(strID)) return "";
SB s = new SB();
int modelCount = vwr.getModelCount();
if (modelCount > 1) appendCmd(s, "frame " + vwr.getModelNumberDotted(modelIndex));
if (moCutoff != null)
appendCmd(s, "mo cutoff " + (sg.getIsPositiveOnly() ? "+" : "") + moCutoff);
if (moScale != null) appendCmd(s, "mo scale " + moScale);
if (moMonteCarloCount != null)
appendCmd(s, "mo points " + moMonteCarloCount + " " + moRandomSeed);
if (moResolution != null) appendCmd(s, "mo resolution " + moResolution);
if (moPlane != null)
appendCmd(
s, "mo plane {" + moPlane.x + " " + moPlane.y + " " + moPlane.z + " " + moPlane.w + "}");
if (moTitleFormat != null) appendCmd(s, "mo titleFormat " + PT.esc(moTitleFormat));
// the following is a correct object==object test
if (moColorNeg != null)
appendCmd(
s,
"mo color "
+ Escape.escapeColor(moColorNeg.intValue())
+ (moColorNeg.equals(moColorPos)
? ""
: " " + Escape.escapeColor(moColorPos.intValue())));
if (moSlab != null) {
if (thisMesh.slabOptions != null) appendCmd(s, thisMesh.slabOptions.toString());
if (thisMesh.jvxlData.slabValue != Integer.MIN_VALUE)
appendCmd(s, "mo slab " + thisMesh.jvxlData.slabValue);
}
if (moLinearCombination == null) {
appendCmd(s, "mo " + (moSquareData == Boolean.TRUE ? "squared " : "") + moNumber);
} else {
appendCmd(
s,
"mo "
+ QS.getMOString(moLinearCombination)
+ (moSquareLinear == Boolean.TRUE ? " squared" : ""));
}
if (moTranslucency != null) appendCmd(s, "mo translucent " + moTranslucentLevel);
appendCmd(s, ((IsosurfaceMesh) thisModel.get("mesh")).getState("mo"));
return s.toString();
}
private void getStateID(SB sb) {
V3 v1 = new V3();
for (Ellipsoid ellipsoid : simpleEllipsoids.values()) {
Tensor t = ellipsoid.tensor;
if (!ellipsoid.isValid || t == null) continue;
sb.append(" Ellipsoid ID ")
.append(ellipsoid.id)
.append(" modelIndex ")
.appendI(t.modelIndex)
.append(" center ")
.append(Escape.eP(ellipsoid.center))
.append(" axes");
for (int i = 0; i < 3; i++) {
v1.setT(t.eigenVectors[i]);
v1.scale(ellipsoid.lengths[i]);
sb.append(" ").append(Escape.eP(v1));
}
sb.append(" " + getColorCommandUnk("", ellipsoid.colix, translucentAllowed));
if (ellipsoid.options != null) sb.append(" options ").append(PT.esc(ellipsoid.options));
if (!ellipsoid.isOn) sb.append(" off");
sb.append(";\n");
}
}