@Test(dataProvider = "MeetsMinSequenceData")
public void testSplitterCompleteCycle(
final List<String> mids,
final int minSeqLength,
final boolean prefixMeets,
final boolean suffixMeets) {
final SeqGraph graph = new SeqGraph(11);
final SeqVertex top = new SeqVertex("AAAAAAAA");
final SeqVertex bot = new SeqVertex("GGGGGGGG");
final List<SeqVertex> v = new ArrayList<>();
for (final String s : mids) {
v.add(new SeqVertex(s));
}
graph.addVertices(v.toArray(new SeqVertex[v.size()]));
graph.addVertices(top, bot);
for (final SeqVertex vi : v) {
graph.addEdge(top, vi);
graph.addEdge(vi, bot);
}
final SharedVertexSequenceSplitter splitter = new SharedVertexSequenceSplitter(graph, v);
Assert.assertEquals(
splitter.meetsMinMergableSequenceForPrefix(minSeqLength), prefixMeets, "Prefix failed");
Assert.assertEquals(
splitter.meetsMinMergableSequenceForSuffix(minSeqLength), suffixMeets, "Suffix failed");
Assert.assertEquals(
splitter.meetsMinMergableSequenceForEitherPrefixOrSuffix(minSeqLength),
suffixMeets || prefixMeets,
"Either prefix or suffix failed");
}
