예제 #1
0
  public Param getColunitPeptide(PeptideTableField column) throws MzTabParsingException {
    if (column == PeptideTableField.PEPTIDE_ABUNDANCE
        || column == PeptideTableField.PEPTIDE_ABUNDANCE_STD
        || column == PeptideTableField.PEPTIDE_ABUNDANCE_STD_ERROR) {
      throw new MzTabParsingException(
          "The colunit field cannot be used to store units for abundance columns. Please use getPeptideQuantificationUnit");
    }

    if (column == PeptideTableField.CUSTOM) {
      throw new MzTabParsingException(
          "This function cannot be used to retrieve units for optional columns");
    }
    return getColunitPeptide(column.toString());
  }
예제 #2
0
  public void setColunitPeptide(PeptideTableField column, Param unit) throws MzTabParsingException {
    if (column == PeptideTableField.PEPTIDE_ABUNDANCE
        || column == PeptideTableField.PEPTIDE_ABUNDANCE_STD
        || column == PeptideTableField.PEPTIDE_ABUNDANCE_STD_ERROR) {
      throw new MzTabParsingException("Colunits must not be set for columns specifying abundance.");
    }

    if (column == PeptideTableField.CUSTOM) {
      throw new MzTabParsingException("This function cannot be used to set custom column units.");
    }

    if (column == PeptideTableField.ROW_PREFIX || column == PeptideTableField.HEADER_PREFIX) {
      throw new MzTabParsingException("ROW_PREFIX and HEADER_PREFIX are not valid columns.");
    }

    setColunitPeptide(column.toString(), unit);
  }