/**
  * A private method to read the connection string parameter from the web.xml file
  *
  * @return the database connection string
  */
 private String getConnectionString() {
   if (InputUtils.isValid(rdf.getContextParam("databaseConnectionString")) == false) {
     throw new RuntimeException(
         "Unable to read the connection string parameter from the web.xml file");
   } else {
     return rdf.getContextParam("databaseConnectionString");
   }
 }
  /**
   * A method to build a collection of collaborator objects representing a network based on an
   * organisation
   *
   * @param id the id of the central organisation
   * @param radius the number of edges required from the central contributor
   * @return the collection of collaborator objects
   */
  @SuppressWarnings("rawtypes")
  public TreeMap<Integer, Collaborator> getRawCollaboratorData_org(String id, int radius) {

    // check the parameters
    if (InputUtils.isValidInt(id) == false) {
      throw new IllegalArgumentException("Error: the id parameter is required");
    }

    if (InputUtils.isValidInt(radius, ExportServlet.MIN_DEGREES, ExportServlet.MAX_DEGREES)
        == false) {
      throw new IllegalArgumentException(
          "Error: the radius parameter must be between "
              + ExportServlet.MIN_DEGREES
              + " and "
              + ExportServlet.MAX_DEGREES);
    }

    // define helper variables
    // collection of collaborators
    java.util.TreeMap<Integer, Collaborator> cId_cObj_map =
        new java.util.TreeMap<Integer, Collaborator>();

    // set of collaborators that we've already processed
    java.util.TreeSet<Integer> foundCollaboratorsSet = new java.util.TreeSet<Integer>();

    // define other helper variables
    String contributor_id = null;
    QuerySolution row = null;
    Collaborator collaborator = null;

    String sql =
        "SELECT DISTINCT b.eventid   "
            + "FROM events a, orgevlink b "
            + "WHERE b.organisationid = ? " // +id
            + "AND a.eventid = b.eventid";

    int[] param = {Integer.parseInt(id)};
    java.sql.ResultSet resultSet = db.exePreparedStatement(sql, param);

    ArrayList<String> eventResults = new ArrayList<String>();

    try {
      //		 	check to see that data was returned
      if (!resultSet.last()) {
        db.tidyup();
        return null;
      } else resultSet.beforeFirst();

      // loop through the resultset
      while (resultSet.next() == true) {
        eventResults.add(resultSet.getString(1));
      }

    } catch (java.sql.SQLException ex) {
      System.out.println("Exception: " + ex.getMessage());
      resultSet = null;
    }

    db.tidyup();

    // helper
    int first = 0;

    // define the query
    String sparqlQuery1 =
        "PREFIX foaf:       <"
            + FOAF.NS
            + "> "
            + "PREFIX ausestage:  <"
            + AuseStage.NS
            + "> "
            + "PREFIX event:      <http://purl.org/NET/c4dm/event.owl#> "
            + "PREFIX dcterms:    <http://purl.org/dc/terms/> "
            + "SELECT DISTINCT ?agent ?givenName ?familyName "
            + "WHERE { ";
    for (String event : eventResults) {
      if (first > 0) {
        sparqlQuery1 += "UNION ";
      }
      first++;

      sparqlQuery1 +=
          "{<ausstage:e:"
              + event
              + "> a                event:Event; "
              + "   event:agent      ?agent. "
              + "	?agent             a                foaf:Person; "
              + "   foaf:givenName   ?givenName; "
              + "   foaf:familyName  ?familyName. "
              + " } ";
    }
    sparqlQuery1 += " } ";

    // execute query
    ResultSet results = rdf.executeSparqlQuery(sparqlQuery1);

    // now we transfer the results to a TreeMap <Integer,
    while (results.hasNext()) {

      row = results.nextSolution();

      contributor_id = AusStageURI.getId(row.get("agent").toString());

      collaborator = new Collaborator(contributor_id);

      cId_cObj_map.put(Integer.parseInt(contributor_id), collaborator);
      foundCollaboratorsSet.add(Integer.parseInt(contributor_id));
    }

    rdf.tidyUp();

    return cId_cObj_map;
  } // end getRawCollaboratorData_org method
  /*
   * add some of the additional required information for collaborator
   */
  public ArrayList<Collaborator> getCollaborators(
      TreeMap<Integer, Collaborator> network, String id) {

    // declare helper variables
    java.util.ArrayList<Collaborator> collaborators = new java.util.ArrayList<Collaborator>();

    // define a SPARQL query to get details about a collaborator
    String sparqlQuery =
        "PREFIX foaf:       <"
            + FOAF.NS
            + ">"
            + "PREFIX ausestage:  <"
            + AuseStage.NS
            + "> "
            + "SELECT ?collabName ?function ?gender ?nationality  "
            + "WHERE {  "
            + "       @ a foaf:Person ; "
            + "           foaf:name ?collabName. "
            + "OPTIONAL {@ ausestage:function ?function} "
            + "OPTIONAL {@ foaf:gender ?gender} "
            + "OPTIONAL {@ ausestage:nationality ?nationality} "
            + "} ";

    String queryToExecute = null;

    ResultSet results = null;
    QuerySolution row = null;
    Collaborator collaborator = null;

    // loop through the list of collaborators and get additional information
    Collection networkKeys = network.keySet();
    Iterator networkKeyIterator = networkKeys.iterator();
    Integer networkKey = null;
    Integer centreId = Integer.parseInt(id);

    // loop through the list of keys
    while (networkKeyIterator.hasNext()) {

      // get the key for this collaborator
      networkKey = (Integer) networkKeyIterator.next();

      // create a new collaborator object
      collaborator = new Collaborator(networkKey.toString());

      // build the query
      queryToExecute =
          sparqlQuery.replaceAll(
              "@", "<" + AusStageURI.getContributorURI(collaborator.getId()) + ">");

      // execute the query
      results = rdf.executeSparqlQuery(queryToExecute);

      // add details to this contributor
      while (results.hasNext()) {
        // loop though the resulset
        // get a new row of data
        row = results.nextSolution();

        // add the data to the collaborator
        collaborator.setName(row.get("collabName").toString());
        if (row.get("function") != null) {
          collaborator.setFunction(row.get("function").toString());
        }

        if (row.get("gender") != null) {
          collaborator.setGender(row.get("gender").toString());
        }

        if (row.get("nationality") != null) {
          collaborator.setNationality(row.get("nationality").toString());
        }

        collaborator.setUrl(AusStageURI.getContributorURL(collaborator.getId()));
      }

      // play nice and tidy
      rdf.tidyUp();
      results = null;

      // add the collaborator to the list
      collaborators.add(collaborator);
    }

    return collaborators;
  }
 private List<UsageInfo> getSelectedUsageInfos() {
   return USAGE_INFO_LIST_KEY.getData(DataManager.getInstance().getDataContext(myRootPanel));
 }