public NamedRegion createNamedRegion(BlastTabEntry e) { int start = Math.min(e.getSubjectStart(), e.getSubjectEnd()); int end = Math.max(e.getSubjectStart(), e.getSubjectEnd()); String chrom = getChrom(e.getSubject()); return new NamedRegion(genome, chrom, start, end, e.getQuery()); }