public String getTitle() {
LinkedList<Throwable> stack = getStack();
if (stack.isEmpty()) {
return "NO EXCEPTION";
} else {
return getTitle(stack.removeFirst());
}
}
public ShowComp() throws InterruptedException, IOException {
super("CONNECTED COMPUTERS");
int x = 0, d = 20;
mb = new JMenuBar();
File = new JMenu("File");
mb.add(File);
exit = new JMenuItem("Exit");
exit.addActionListener(this);
File.add(exit);
ta = new JTextArea();
ta.setBounds(20, 30, 315, 470);
ta.setEditable(false);
add(ta);
setJMenuBar(mb);
sel = new JLabel("The connected computers are..");
sel.setBounds(15, 5, 300, 30);
add(sel);
b1 = new JButton("<< BACK");
b1.setBounds(140, 510, 100, 30);
b1.setToolTipText("Back to main page");
b1.addActionListener(this);
add(b1);
setLayout(null);
while (x < 360) {
x = x + d;
setBounds(675, 50, x, 600);
this.show();
}
// setVisible(true);
String s = "192.168.0.", temp = null;
Printer printer = new Printer();
printer.start();
Connector connector = new Connector(printer);
connector.start();
LinkedList targets = new LinkedList();
for (int i = 1; i <= 255; i++) {
temp = s + Integer.toString(i);
Target t = new Target(temp);
targets.add(t);
connector.add(t);
}
Thread.sleep(2000);
connector.shutdown();
connector.join();
for (Iterator i = targets.iterator(); i.hasNext(); ) {
Target t = (Target) i.next();
if (!t.shown) t.show();
}
setDefaultCloseOperation(DISPOSE_ON_CLOSE);
}
public void run() {
try {
for (; ; ) {
Target t = null;
synchronized (pending) {
while (pending.size() == 0) pending.wait();
t = (Target) pending.removeFirst();
}
t.show();
}
} catch (InterruptedException x) {
return;
}
}
public void run() {
Map read;
boolean shouldRead = go_read;
String command = null;
long last = 0;
try {
/* swallow the banner if requested to do so */
if (swallow) {
readResponse();
}
while (shouldRead) {
synchronized (listeners) {
if (commands.size() > 0) {
command = (String) commands.removeFirst();
}
}
if (command != null) {
_sendString(command);
command = null;
lastRead = System.currentTimeMillis();
}
long now = System.currentTimeMillis();
if (this.window != null && !this.window.isShowing() && (now - last) < 1500) {
/* check if our window is not showing... if not, then we're going to switch to a very reduced
read schedule. */
} else {
read = readResponse();
if (read == null || "failure".equals(read.get("result") + "")) {
break;
}
processRead(read);
last = System.currentTimeMillis();
}
Thread.sleep(100);
synchronized (listeners) {
shouldRead = go_read;
}
}
} catch (Exception javaSucksBecauseItMakesMeCatchEverythingFuckingThing) {
javaSucksBecauseItMakesMeCatchEverythingFuckingThing.printStackTrace();
}
}
public int bfs() {
int[] record = new int[n];
Arrays.fill(record, Integer.MAX_VALUE);
LinkedList<Integer> queue = new LinkedList<Integer>();
queue.addLast(0);
int distance = 0;
int count = 1;
while (queue.size() > 0) {
int newCount = 0;
while (count > 0) {
int tempPoint = queue.pollFirst();
ArrayList<Road> tempRoads = roads[tempPoint];
}
distance++;
}
}
void add(Target t) {
SocketChannel sc = null;
try {
sc = SocketChannel.open();
sc.configureBlocking(false);
boolean connected = sc.connect(t.address);
t.channel = sc;
t.connectStart = System.currentTimeMillis();
if (connected) {
t.connectFinish = t.connectStart;
sc.close();
printer.add(t);
} else {
synchronized (pending) {
pending.add(t);
}
sel.wakeup();
}
} catch (IOException x) {
if (sc != null) {
try {
sc.close();
} catch (IOException xx) {
}
}
t.failure = x;
printer.add(t);
}
}
void processPendingTargets() throws IOException {
synchronized (pending) {
while (pending.size() > 0) {
Target t = (Target) pending.removeFirst();
try {
t.channel.register(sel, SelectionKey.OP_CONNECT, t);
} catch (IOException x) {
t.channel.close();
t.failure = x;
printer.add(t);
}
}
}
}
protected LinkedList<Throwable> getStack() {
Throwable e = exception;
LinkedList<Throwable> stack = new LinkedList<Throwable>();
while (e != null) {
stack.addFirst(e);
if (e instanceof NotFoundException) {
status = HttpServletResponse.SC_NOT_FOUND;
}
if (e instanceof ServletException) {
Throwable t = ((ServletException) e).getRootCause();
if (t == null) t = e.getCause();
e = t;
} else if (e instanceof javax.servlet.jsp.JspException) {
Throwable t = ((JspException) e).getRootCause();
if (t == null) t = e.getCause();
e = t;
} else {
e = e.getCause();
}
}
return stack;
}
public void search(Vertex[] nodes, int start) {
LinkedList<Vertex> queue = new LinkedList<>();
nodes[start].numPaths = 1;
nodes[start].minDistance = 0;
queue.addLast(nodes[start]);
while (!queue.isEmpty()) {
Vertex curr = queue.removeFirst();
for (Edge e : curr.edges) {
Vertex other = e.end;
if (!other.checked) {
other.checked = true;
queue.addLast(other);
}
if (curr.minDistance + e.weight < other.minDistance) {
other.minDistance = curr.minDistance + e.weight;
other.numPaths = curr.numPaths;
} else if (curr.minDistance + e.weight == other.minDistance) {
other.numPaths += curr.numPaths;
}
}
}
}
public Collection<NamedRegion> parseProbes() throws IOException {
double ethreshold = 1.0e-3;
Parser<BlastTabEntry> parser =
new Parser<BlastTabEntry>(blasttab, new BlastTabEntry.ParsingMapper());
Iterator<BlastTabEntry> itr =
new FilterIterator<BlastTabEntry, BlastTabEntry>(
new BlastTabEntry.ExpectedScoreFilter(ethreshold), parser);
Map<String, Set<Region>> primerHits = new TreeMap<String, Set<Region>>();
Set<String> primerNames = new TreeSet<String>();
while (itr.hasNext()) {
BlastTabEntry entry = itr.next();
NamedRegion r = createNamedRegion(entry);
if (!primerHits.containsKey(entry.getQuery())) {
primerHits.put(entry.getQuery(), new HashSet<Region>());
}
primerHits.get(entry.getQuery()).add(r);
primerNames.add(removePrimerLR(entry.getQuery()));
}
LinkedList<NamedRegion> probes = new LinkedList<NamedRegion>();
for (String primerName : primerNames) {
Pair<Region, Region> hits = findProbePair(primerName, primerHits);
if (hits != null) {
Region left = hits.getFirst(), right = hits.getLast();
int start = Math.min(left.getStart(), right.getStart());
int end = Math.max(left.getEnd(), right.getEnd());
NamedRegion probe = new NamedRegion(genome, left.getChrom(), start, end, primerName);
probes.addLast(probe);
}
}
return probes;
}
public void drawsmall(GOut g, Coord br, int h) {
Coord c;
if (qline != null) {
if ((rqline == null) || !rqline.text.equals(qline.line)) {
String pre = String.format("%s> ", qline.chan.name());
rqline = qfnd.render(pre + qline.line);
rqpre = pre.length();
}
c = br.sub(0, 20);
g.chcolor(24, 24, 16, 200);
g.frect(c, rqline.tex().sz());
g.chcolor();
g.image(rqline.tex(), c);
int lx = rqline.advance(qline.point + rqpre);
g.line(new Coord(br.x + lx + 1, br.y - 18), new Coord(br.x + lx + 1, br.y - 6), 1);
} else {
c = br.sub(0, 5);
}
long now = System.currentTimeMillis();
synchronized (notifs) {
for (Iterator<Notification> i = notifs.iterator(); i.hasNext(); ) {
Notification n = i.next();
if (now - n.time > 5000) {
i.remove();
continue;
}
if ((c.y -= n.msg.sz().y) < br.y - h) break;
g.chcolor(24, 24, 16, 200);
g.frect(c, n.chnm.tex().sz().add(n.msg.tex().sz().x + selw, 0));
g.chcolor();
g.image(n.chnm.tex(), c, br.sub(0, h), br.add(selw - 10, 0));
g.image(n.msg.tex(), c.add(selw, 0));
}
}
}
public void sendString(String text) {
synchronized (listeners) {
commands.add(text);
}
}
public Writer getErrorReport(
Writer to, final HttpServletRequest request, CharTransformer escape) throws IOException {
final Writer logMsg = new StringWriter();
final Writer tee = new org.mmbase.util.ChainedWriter(to, logMsg);
Writer msg = tee;
LinkedList<Throwable> stack = getStack();
String ticket = new Date().toString();
Map<String, String> props;
try {
props = org.mmbase.util.ApplicationContextReader.getProperties("mmbase_errorpage");
} catch (javax.naming.NamingException ne) {
props = Collections.emptyMap();
log.info(ne);
}
if (request != null) {
{
msg.append("Headers\n----------\n");
// request properties
for (Object name : Collections.list(request.getHeaderNames())) {
msg.append(
escape.transform(
name + ": " + escape.transform(request.getHeader((String) name)) + "\n"));
}
}
{
msg.append("\nAttributes\n----------\n");
Pattern p = requestIgnore;
if (p == null && props.get("request_ignore") != null) {
p = Pattern.compile(props.get("request_ignore"));
}
for (Object name : Collections.list(request.getAttributeNames())) {
if (p == null || !p.matcher((String) name).matches()) {
msg.append(
escape.transform(name + ": " + request.getAttribute((String) name) + "\n"));
}
}
}
if (Boolean.TRUE.equals(showSession)
|| (showSession == null && !"false".equals(props.get("show_session")))) {
HttpSession ses = request.getSession(false);
if (ses != null) {
msg.append("\nSession\n----------\n");
Pattern p = sessionIgnore;
if (p == null && props.get("session_ignore") != null) {
p = Pattern.compile(props.get("session_ignore"));
}
for (Object name : Collections.list(ses.getAttributeNames())) {
if (p == null || !p.matcher((String) name).matches()) {
msg.append(escape.transform(name + ": " + ses.getAttribute((String) name) + "\n"));
}
}
}
}
}
msg.append("\n");
msg.append("Misc. properties\n----------\n");
if (request != null) {
msg.append("method: ").append(escape.transform(request.getMethod())).append("\n");
msg.append("querystring: ").append(escape.transform(request.getQueryString())).append("\n");
msg.append("requesturl: ")
.append(escape.transform(request.getRequestURL().toString()))
.append("\n");
}
if (Boolean.TRUE.equals(showMMBaseVersion)
|| (showMMBaseVersion == null && !"false".equals(props.get("show_mmbase_version")))) {
msg.append("mmbase version: ").append(org.mmbase.Version.get()).append("\n");
}
msg.append("status: ").append("").append(String.valueOf(status)).append("\n\n");
if (request != null) {
msg.append("Parameters\n----------\n");
// request parameters
Enumeration en = request.getParameterNames();
while (en.hasMoreElements()) {
String name = (String) en.nextElement();
msg.append(name)
.append(": ")
.append(escape.transform(request.getParameter(name)))
.append("\n");
}
}
msg.append("\nException ")
.append(ticket)
.append("\n----------\n\n")
.append(
exception != null
? (escape.transform(exception.getClass().getName()))
: "NO EXCEPTION")
.append(": ");
int wroteCauses = 0;
while (!stack.isEmpty()) {
Throwable t = stack.removeFirst();
// add stack stacktraces
if (t != null) {
if (stack.isEmpty()) { // write last message always
msg = tee;
}
String message = t.getMessage();
if (msg != tee) {
to.append("\n=== skipped(see log) : ")
.append(escape.transform(t.getClass().getName()))
.append(": ")
.append(message)
.append("\n");
}
msg.append("\n\n").append(escape.transform(t.getClass().getName() + ": " + message));
StackTraceElement[] stackTrace = t.getStackTrace();
for (StackTraceElement e : stackTrace) {
msg.append("\n at ").append(escape.transform(e.toString()));
}
if (!stack.isEmpty()) {
msg.append("\n-------caused:\n");
}
wroteCauses++;
if (wroteCauses >= MAX_CAUSES) {
msg = logMsg;
}
}
}
// write errors to log
if (status == 500) {
try {
if (props.get("to") != null && props.get("to").length() > 0) {
javax.naming.Context initCtx = new javax.naming.InitialContext();
javax.naming.Context envCtx = (javax.naming.Context) initCtx.lookup("java:comp/env");
Object mailSession = envCtx.lookup("mail/Session");
Class sessionClass = Class.forName("javax.mail.Session");
Class recipientTypeClass = Class.forName("javax.mail.Message$RecipientType");
Class messageClass = Class.forName("javax.mail.internet.MimeMessage");
Object mail = messageClass.getConstructor(sessionClass).newInstance(mailSession);
messageClass
.getMethod("addRecipients", recipientTypeClass, String.class)
.invoke(mail, recipientTypeClass.getDeclaredField("TO").get(null), props.get("to"));
messageClass.getMethod("setSubject", String.class).invoke(mail, ticket);
mail.getClass().getMethod("setText", String.class).invoke(mail, logMsg.toString());
Class.forName("javax.mail.Transport")
.getMethod("send", Class.forName("javax.mail.Message"))
.invoke(null, mail);
tee.append("\nmailed to (").append(String.valueOf(props)).append(")");
}
} catch (Exception nnfe) {
tee.append("\nnot mailed (").append(String.valueOf(nnfe)).append(")");
if (log.isDebugEnabled()) {
log.debug(nnfe.getMessage(), nnfe);
}
}
log.error("TICKET " + ticket + ":\n" + logMsg);
}
return to;
}
public void addSessionListener(ConsoleCallback l) {
listeners.add(l);
}
public void fireSessionWroteEvent(String text) {
Iterator i = listeners.iterator();
while (i.hasNext()) {
((ConsoleCallback) i.next()).sessionWrote(session, text);
}
}
void add(Target t) {
synchronized (pending) {
pending.add(t);
pending.notify();
}
}
public void notify(Channel chan, Channel.Message msg) {
synchronized (notifs) {
notifs.addFirst(new Notification(chan, msg));
}
Audio.play(notifsfx);
}